Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00853 ATGGGTCAGATCCAGTACTCCGAGAAGTATTTCGATGATACCTATGAGTATAGACATGTGGTCCTGCCTCCAGAAGTCGCCAAAATGCTTCCCAAGAATCGTCTTCTCTCCGAAAACGAGTGGAGGGCGATTGGGGTTCAGCAGAGTCGTGGTTGGGTTCACTACGCAATCCATCGCCCTGAGCCACACATAATGCTTTTCAGGAGGCCATTGAATTATCAGCAACAGCAGGAAAACCAGGCCCAGCAAAGCATGCTTAAAAAAAAGAAGACGAAAGATTCAGACCAGTTCCGAGGGTTTGGTATTGCAATTTGGTACCAGATTCACTTACCTGCGTCCATGGCCCGTGCACGCAATCTAATGGTTGCTACGGGTTTACTTGCTTTCGCTGCAGCAGGCATGGCATTTCCCTTCTACATGGCTTCATCAAGGAATCCTGTTATTGACCCAACAAAGCCACTTCCACCACAAGCCACTTTTCGAGGGCCTTACATTAACACAGGCTCGCGTGATGTTGGTCCAGATGCTGGTCCCCAGAAGAAATGA 546 0.4872 MGQIQYSEKYFDDTYEYRHVVLPPEVAKMLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQSMLKKKKTKDSDQFRGFGIAIWYQIHLPASMARARNLMVATGLLAFAAAGMAFPFYMASSRNPVIDPTKPLPPQATFRGPYINTGSRDVGPDAGPQKK 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00853 181 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Cca04g00853 181 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 96 - -
Cca04g00853 181 MobiDBLite consensus disorder prediction 150 181 - -
Cca04g00853 181 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Cca04g00853 181 Gene3D - 1 99 IPR036858 GO:0016538
Cca04g00853 181 SUPERFAMILY Cell cycle regulatory proteins 1 82 IPR036858 GO:0016538
Cca04g00853 181 SMART CKS_2 3 72 IPR000789 GO:0016538
Cca04g00853 181 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 96 - -
Cca04g00853 181 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Cca04g00853 181 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Cca04g00853 181 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Cca04g00853 181 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00853 Cca-Chr4 8890773 8894507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00853 1 82 Core Cell Cycle Gene Families AT2G27970 90.244 2.10e-51 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00853 K02219 - gmx:547737 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00853 04 8890773 8894507 Cca04g00853 04 8890773 8894507 ECH