Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00850 ATGGAATTCTCCAAGCGCAAAGTGCTACTACTAAACGAGGACGTTCCCAATCCCATGGCCAGGCCCCCTCTCCCAGACGCCAAACACGCCGTAAACACGTCGGCGGCGGCGCCGCAGCAGCAATTCTCAACGCCGGCGAGCCCTCTGCAAGTGGCGATTCGTCCGGTATTCGCCTCCAGCGTGGCCTACGTCTTCCTCATCCTCTTCACCACCTTCTTCTTCATCGGCTTCGTCTTCCTCTACTTCCGCCAGTTCCCCTCCGAGGTCGCCACCTTCCGCCGCAGCCGCAGCCGTCGGAGTCCGCCCTCCGCCGCGGCCAAGTCCCTGCCGGTGGTGGCGCACCGCGGCGACGGCGGGAAGCAGGCGGAGTGCGCGATATGTCTGGAGGAGTTCGGCGACGGCGAGGCGGTGAAGGTGATACCGCAGTGCGGGCACGTGTTCCACCCGCAGTGCATTGACACGTGGCTTGAGGCGCACGTGTCGTGCCCCGTGTGCCGGTGCAGCGAGTTTAGTGGAGCGGCGGTGAAGGAGAGTGAAGAGGTGGAATCGGTTTGA 555 0.6414 MEFSKRKVLLLNEDVPNPMARPPLPDAKHAVNTSAAAPQQQFSTPASPLQVAIRPVFASSVAYVFLILFTTFFFIGFVFLYFRQFPSEVATFRRSRSRRSPPSAAAKSLPVVAHRGDGGKQAECAICLEEFGDGEAVKVIPQCGHVFHPQCIDTWLEAHVSCPVCRCSEFSGAAVKESEEVESV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00850 184 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Cca04g00850 184 SUPERFAMILY RING/U-box 118 168 - -
Cca04g00850 184 SMART ring_2 124 165 IPR001841 -
Cca04g00850 184 Pfam Ring finger domain 123 166 IPR001841 -
Cca04g00850 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 170 IPR013083 -
Cca04g00850 184 MobiDBLite consensus disorder prediction 15 37 - -
Cca04g00850 184 CDD RING-H2_PA-TM-RING 123 166 - -
Cca04g00850 184 PANTHER RING-H2 FINGER PROTEIN ATL57 44 172 - -
Cca04g00850 184 PANTHER RING FINGER DOMAIN-CONTAINING 44 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00850 Cca-Chr4 8859883 8860784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00850 59 170 C3H Transcription Factor Family AT2G27940 36.691 4.14e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00850 - K10664 gmx:102663476 184.496