Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00849 | ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTTCTTTCCTGAGGGACTCCCATTCCCAGTCCTCTGGGAGAGGTGGAGAGAGAAGACGGGGAAGCACCCAGTCTTCTTCAATCCTGCGAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGACCTGGTGAAGTAATTGAACAAAGGAGGGATGAGTTAATTGTGGACCGTTCGCGGGACAATAGACTGGATATCCAAGAGAGAGCACAGGGGCATGTTCTAGAAGATGCAGTTTTGGGTGAGAATGAATCTGAAACATGGTCACAGTCACAAAGTCAGAATGAATCCCATGATGATCTTGAGGATTTAAACAATTCTACCTGTGAGAACTCTTCCGCCTTGGGAGAAGTTGAAAGGGTAAGAGTGAGGCAAATTTTCAGGGAATGGATGAACAGTGGTGCTGGGGATCATGTATCAAACATTTCCCGAAGAAGTAATGGTTCAAGGGGACAATGGCTCGGAGAAACTGAGCAAGAAAGGGTGAGAGTTATACGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCTCCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGATACACAAATTGAACGTGTGCGTGATGGACTCATTGTTAACCAGATTGGGGGCCAAACTGAGCATACAAGGAGGGGCATACGAAAATTATGTGGCCGACAGGCTATGCTTGATATGCTTAAGAAGGCTGAGAGAGAAAGGCAAAGGGAAATTCATGAGTTGTTGGACCATCGGGCCGTATCGAAGTTCCCTTATCGGAATCGCATTCAGGCACTGCTTAGAGGCAGATTCTTGAGAAAAGATGGACCTGTTCATAATAACAGGCCCCTTTCTGTTGCAGAAAGTGAATTAGGCTTCTTGAGGCGAAGACAAACTGTATCAGGTCTAAGGGAAGGATTTTCCTCCAGAAAGGAAAATAGTGGATGCTGTGAAGCTACCAGCCATGCATCTGATGCTTCATCTAATGTTGATATTGATTTTAATATGAATGAACAAACAGGATCAAGCAGTTCACACATGGTCCCAAGTGTACATTCTGAGCAGTATGACCCTAGTGACATGGGAAGCATTGTACTTGGGGTATCAGACAGCCAGATAAGTTTACAAGGAACCACATGTGAAAATTTAGATTGGCAAGAATCTACTGCTCAAGTAGGAGATCATTTGCCAATTAAATCAAAAGATTGTCAATCATCATGCAGTGTGGGCATTGAAAGAGGGGACAATATTGAGCAAAATGTTACTGTGATGCCAACTGAAGATACTACTAATGAACTTACCCTACAAAGTTTGCAAATTGCAGATTCAGAGCATAATATTAATCAAGAATTCTGCGAGGTGCATAATGAGCAATCTGGGCTCGGTGATTTAAATAATAATGAAAACAATTCTTCAAATCACAACAATCATATGGAGGATAATGTTAATGATGATGTAAATTGGAATGAATCTAGTGCTCTTGAAGGAGAACAGCCAGAAGAAGCTTTTGAAAATGAAGGAAGTGGGTGGTATCAGAGTGATACTGAATGGAGAAATAGCACCGAGGAAAATGTTGATGATAATCAGCTTAGTAATACAGCAAACGAGTGGCCTGAAAACAATTTGGGAAATGAGGATGGAGAGAATTCTCGTCTGCCGGAATCTCATGAAGTGTGGCATGAAGATGGTGGCTTCCAAGAGGCTGTAGAAAACTGGCTGGGAGGACCTTCTGATCATGAAAGTGCTCCAGTTGGTAGAATTCGTGGATTTTATTTTCCTGATGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCTAACCTGCTTGGAAGCAGTTTCCGTGACAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGACAAGGTCATGCAAACATTGACTGGGAGCTGCAAGAAGCAACTCCTGCCTCAGTAGAGCAGGACCTTGAGCCACAGAGCAGGGATGAAGTTGTTGGTCAGGAGGCTACTGTTAATAGTCCACCTGACATGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTTTGGGACCAGCACCCCCCTCGTGACAACTGGTCACATAACAACATAAATAATCAGCGTCTTGGAATTGATTGGGAGATTGTTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCCGATTCATCAGGAATACATGACTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGTTGTATATGCTGTGAAAACAATATCGATTCTTTGTTGTACAGGTGTGGGCATTTGTGTACATGCGCCAAATGTGCCAATGAGTTGCTCCAAAGCAGAAGAAAGTGCCCAATGTGTCAAGCTCCTGTGGTGGAGGTGATACGTGCTTATTCTATACAATAA | 2565 | 0.4339 | MAIAGLHSVSVLDSSFLRDSHSQSSGRGGERRRGSTQSSSILRMWREIEDEHVVNQVQGRPGEVIEQRRDELIVDRSRDNRLDIQERAQGHVLEDAVLGENESETWSQSQSQNESHDDLEDLNNSTCENSSALGEVERVRVRQIFREWMNSGAGDHVSNISRRSNGSRGQWLGETEQERVRVIREWVQMSSQQRSVSPGENREEPSAEIDTQIERVRDGLIVNQIGGQTEHTRRGIRKLCGRQAMLDMLKKAERERQREIHELLDHRAVSKFPYRNRIQALLRGRFLRKDGPVHNNRPLSVAESELGFLRRRQTVSGLREGFSSRKENSGCCEATSHASDASSNVDIDFNMNEQTGSSSSHMVPSVHSEQYDPSDMGSIVLGVSDSQISLQGTTCENLDWQESTAQVGDHLPIKSKDCQSSCSVGIERGDNIEQNVTVMPTEDTTNELTLQSLQIADSEHNINQEFCEVHNEQSGLGDLNNNENNSSNHNNHMEDNVNDDVNWNESSALEGEQPEEAFENEGSGWYQSDTEWRNSTEENVDDNQLSNTANEWPENNLGNEDGENSRLPESHEVWHEDGGFQEAVENWLGGPSDHESAPVGRIRGFYFPDDDNVYSVELRELLNRRSVSNLLGSSFRDSLDQLIQSYVERQGHANIDWELQEATPASVEQDLEPQSRDEVVGQEATVNSPPDMPSLPIPPPLPLWDQHPPRDNWSHNNINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSADSSGIHDCESPEDKSKWECVRKGLCCICCENNIDSLLYRCGHLCTCAKCANELLQSRRKCPMCQAPVVEVIRAYSIQ | 854 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00849 | 854 | Coils | Coil | 242 | 262 | - | - | |
Cca04g00849 | 854 | MobiDBLite | consensus disorder prediction | 664 | 693 | - | - | |
Cca04g00849 | 854 | MobiDBLite | consensus disorder prediction | 472 | 492 | - | - | |
Cca04g00849 | 854 | MobiDBLite | consensus disorder prediction | 191 | 210 | - | - | |
Cca04g00849 | 854 | MobiDBLite | consensus disorder prediction | 154 | 172 | - | - | |
Cca04g00849 | 854 | Coils | Coil | 730 | 757 | - | - | |
Cca04g00849 | 854 | MobiDBLite | consensus disorder prediction | 17 | 40 | - | - | |
Cca04g00849 | 854 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 854 | - | - | |
Cca04g00849 | 854 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 786 | 852 | IPR013083 | - | |
Cca04g00849 | 854 | MobiDBLite | consensus disorder prediction | 472 | 567 | - | - | |
Cca04g00849 | 854 | MobiDBLite | consensus disorder prediction | 523 | 563 | - | - | |
Cca04g00849 | 854 | CDD | mRING-HC-C3HC5_NEU1 | 802 | 840 | - | - | |
Cca04g00849 | 854 | ProSiteProfiles | Zinc finger RING-type profile. | 802 | 841 | IPR001841 | - | |
Cca04g00849 | 854 | PANTHER | PROTEIN, PUTATIVE-RELATED | 1 | 854 | - | - | |
Cca04g00849 | 854 | SUPERFAMILY | RING/U-box | 801 | 847 | - | - | |
Cca04g00849 | 854 | Pfam | Zinc finger, C3HC4 type (RING finger) | 799 | 846 | - | - | |
Cca04g00849 | 854 | MobiDBLite | consensus disorder prediction | 97 | 130 | - | - | |
Cca04g00849 | 854 | MobiDBLite | consensus disorder prediction | 153 | 174 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00849 | Cca-Chr4 | 8852145 | 8857458 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00849 | 802 | 848 | C3H Transcription Factor Family | AT3G06140 | 40.426 | 3.24e-06 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00849 | - | - | gmx:100801329 | 1394.41 |