Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00849 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTTCTTTCCTGAGGGACTCCCATTCCCAGTCCTCTGGGAGAGGTGGAGAGAGAAGACGGGGAAGCACCCAGTCTTCTTCAATCCTGCGAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGACCTGGTGAAGTAATTGAACAAAGGAGGGATGAGTTAATTGTGGACCGTTCGCGGGACAATAGACTGGATATCCAAGAGAGAGCACAGGGGCATGTTCTAGAAGATGCAGTTTTGGGTGAGAATGAATCTGAAACATGGTCACAGTCACAAAGTCAGAATGAATCCCATGATGATCTTGAGGATTTAAACAATTCTACCTGTGAGAACTCTTCCGCCTTGGGAGAAGTTGAAAGGGTAAGAGTGAGGCAAATTTTCAGGGAATGGATGAACAGTGGTGCTGGGGATCATGTATCAAACATTTCCCGAAGAAGTAATGGTTCAAGGGGACAATGGCTCGGAGAAACTGAGCAAGAAAGGGTGAGAGTTATACGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCTCCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGATACACAAATTGAACGTGTGCGTGATGGACTCATTGTTAACCAGATTGGGGGCCAAACTGAGCATACAAGGAGGGGCATACGAAAATTATGTGGCCGACAGGCTATGCTTGATATGCTTAAGAAGGCTGAGAGAGAAAGGCAAAGGGAAATTCATGAGTTGTTGGACCATCGGGCCGTATCGAAGTTCCCTTATCGGAATCGCATTCAGGCACTGCTTAGAGGCAGATTCTTGAGAAAAGATGGACCTGTTCATAATAACAGGCCCCTTTCTGTTGCAGAAAGTGAATTAGGCTTCTTGAGGCGAAGACAAACTGTATCAGGTCTAAGGGAAGGATTTTCCTCCAGAAAGGAAAATAGTGGATGCTGTGAAGCTACCAGCCATGCATCTGATGCTTCATCTAATGTTGATATTGATTTTAATATGAATGAACAAACAGGATCAAGCAGTTCACACATGGTCCCAAGTGTACATTCTGAGCAGTATGACCCTAGTGACATGGGAAGCATTGTACTTGGGGTATCAGACAGCCAGATAAGTTTACAAGGAACCACATGTGAAAATTTAGATTGGCAAGAATCTACTGCTCAAGTAGGAGATCATTTGCCAATTAAATCAAAAGATTGTCAATCATCATGCAGTGTGGGCATTGAAAGAGGGGACAATATTGAGCAAAATGTTACTGTGATGCCAACTGAAGATACTACTAATGAACTTACCCTACAAAGTTTGCAAATTGCAGATTCAGAGCATAATATTAATCAAGAATTCTGCGAGGTGCATAATGAGCAATCTGGGCTCGGTGATTTAAATAATAATGAAAACAATTCTTCAAATCACAACAATCATATGGAGGATAATGTTAATGATGATGTAAATTGGAATGAATCTAGTGCTCTTGAAGGAGAACAGCCAGAAGAAGCTTTTGAAAATGAAGGAAGTGGGTGGTATCAGAGTGATACTGAATGGAGAAATAGCACCGAGGAAAATGTTGATGATAATCAGCTTAGTAATACAGCAAACGAGTGGCCTGAAAACAATTTGGGAAATGAGGATGGAGAGAATTCTCGTCTGCCGGAATCTCATGAAGTGTGGCATGAAGATGGTGGCTTCCAAGAGGCTGTAGAAAACTGGCTGGGAGGACCTTCTGATCATGAAAGTGCTCCAGTTGGTAGAATTCGTGGATTTTATTTTCCTGATGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCTAACCTGCTTGGAAGCAGTTTCCGTGACAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGACAAGGTCATGCAAACATTGACTGGGAGCTGCAAGAAGCAACTCCTGCCTCAGTAGAGCAGGACCTTGAGCCACAGAGCAGGGATGAAGTTGTTGGTCAGGAGGCTACTGTTAATAGTCCACCTGACATGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTTTGGGACCAGCACCCCCCTCGTGACAACTGGTCACATAACAACATAAATAATCAGCGTCTTGGAATTGATTGGGAGATTGTTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCCGATTCATCAGGAATACATGACTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGTTGTATATGCTGTGAAAACAATATCGATTCTTTGTTGTACAGGTGTGGGCATTTGTGTACATGCGCCAAATGTGCCAATGAGTTGCTCCAAAGCAGAAGAAAGTGCCCAATGTGTCAAGCTCCTGTGGTGGAGGTGATACGTGCTTATTCTATACAATAA 2565 0.4339 MAIAGLHSVSVLDSSFLRDSHSQSSGRGGERRRGSTQSSSILRMWREIEDEHVVNQVQGRPGEVIEQRRDELIVDRSRDNRLDIQERAQGHVLEDAVLGENESETWSQSQSQNESHDDLEDLNNSTCENSSALGEVERVRVRQIFREWMNSGAGDHVSNISRRSNGSRGQWLGETEQERVRVIREWVQMSSQQRSVSPGENREEPSAEIDTQIERVRDGLIVNQIGGQTEHTRRGIRKLCGRQAMLDMLKKAERERQREIHELLDHRAVSKFPYRNRIQALLRGRFLRKDGPVHNNRPLSVAESELGFLRRRQTVSGLREGFSSRKENSGCCEATSHASDASSNVDIDFNMNEQTGSSSSHMVPSVHSEQYDPSDMGSIVLGVSDSQISLQGTTCENLDWQESTAQVGDHLPIKSKDCQSSCSVGIERGDNIEQNVTVMPTEDTTNELTLQSLQIADSEHNINQEFCEVHNEQSGLGDLNNNENNSSNHNNHMEDNVNDDVNWNESSALEGEQPEEAFENEGSGWYQSDTEWRNSTEENVDDNQLSNTANEWPENNLGNEDGENSRLPESHEVWHEDGGFQEAVENWLGGPSDHESAPVGRIRGFYFPDDDNVYSVELRELLNRRSVSNLLGSSFRDSLDQLIQSYVERQGHANIDWELQEATPASVEQDLEPQSRDEVVGQEATVNSPPDMPSLPIPPPLPLWDQHPPRDNWSHNNINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSADSSGIHDCESPEDKSKWECVRKGLCCICCENNIDSLLYRCGHLCTCAKCANELLQSRRKCPMCQAPVVEVIRAYSIQ 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00849 854 Coils Coil 242 262 - -
Cca04g00849 854 MobiDBLite consensus disorder prediction 664 693 - -
Cca04g00849 854 MobiDBLite consensus disorder prediction 472 492 - -
Cca04g00849 854 MobiDBLite consensus disorder prediction 191 210 - -
Cca04g00849 854 MobiDBLite consensus disorder prediction 154 172 - -
Cca04g00849 854 Coils Coil 730 757 - -
Cca04g00849 854 MobiDBLite consensus disorder prediction 17 40 - -
Cca04g00849 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 854 - -
Cca04g00849 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 852 IPR013083 -
Cca04g00849 854 MobiDBLite consensus disorder prediction 472 567 - -
Cca04g00849 854 MobiDBLite consensus disorder prediction 523 563 - -
Cca04g00849 854 CDD mRING-HC-C3HC5_NEU1 802 840 - -
Cca04g00849 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Cca04g00849 854 PANTHER PROTEIN, PUTATIVE-RELATED 1 854 - -
Cca04g00849 854 SUPERFAMILY RING/U-box 801 847 - -
Cca04g00849 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Cca04g00849 854 MobiDBLite consensus disorder prediction 97 130 - -
Cca04g00849 854 MobiDBLite consensus disorder prediction 153 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00849 Cca-Chr4 8852145 8857458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00849 802 848 C3H Transcription Factor Family AT3G06140 40.426 3.24e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00849 - - gmx:100801329 1394.41