Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00847 ATGGACACAATGGATTTTCATCAAGAGACTCTGGTGCAAATTAATGAATTTGTCGAAGATCCCAACTTAGATAAGTTTATCAATTTGATTCGTTGGGAAAACAACGATGCTATTTGTAATAACTTCAATTCTGAGCTTATCAATGAAGCATTCAATGATAACTCATTCATGTCACACGCTCCAATCCCACCTGATCAGTGCAATAGTGATTCTGTGAATGTTTATGATCCaagctctacattgagctccttctcttgttttgatggggaagccaaagaaggagaagaagaagaTAACATGGGGGATTCTTCTGCAACAACAACCACCACAACAGAAATTAAGAATGATAATACTAAGCCAAGACCAAAACCTGATAGGTCCAAAACTTTGGTTTCTGAGAGGAGGAGAAGAAACCGAATGAAGGAGAAGCTTTATGCATTGCGATCTTTGGTTCCCAACATAACTAAGATGGATAAGGCATCTATCATTGGAGATGCTGTTTCATATATGCACGAGCTTCAAGCACAAGCCAAGATGCTGAAGGCTGAGGTTCAAGGACTTGAAACATCCTTAATGGTGTCAAAAAGTTATCAAGGATCCATTGAAAACCCCATGAAGGTTCAATTCATCAACAACATTCGTGCAATATCCAAGAAGATAAACCAGATGGACATGTTTCAAGTGGATGAAAAAGGGTTTTATGTAAAAATAGTTTGCAACAAAGGAGAAGGGGTGGCTGCATCATTGTACAGGTCTCTTGAGTCTCTAACAGCATTCAATGTTCAGAATTCAAACATGGCCACAGTTTCTGACAGTTTTCTACTTACATTTTCATTGAATGCTAAAGGTCGTGAACCAGAAATTAACCTTTACAACTTGAAGCTATGGTTGACTGAAGCTTTTGTGAACCAAGGCTTTGAGTTCACACCTTTTCTTATGCTTGACTCTTTCAATTTATAA 960 0.3531 MDTMDFHQETLVQINEFVEDPNLDKFINLIRWENNDAICNNFNSELINEAFNDNSFMSHAPIPPDQCNSDSVNVYDPSSTLSSFSCFDGEAKEGEEEDNMGDSSATTTTTTEIKNDNTKPRPKPDRSKTLVSERRRRNRMKEKLYALRSLVPNITKMDKASIIGDAVSYMHELQAQAKMLKAEVQGLETSLMVSKSYQGSIENPMKVQFINNIRAISKKINQMDMFQVDEKGFYVKIVCNKGEGVAASLYRSLESLTAFNVQNSNMATVSDSFLLTFSLNAKGREPEINLYNLKLWLTEAFVNQGFEFTPFLMLDSFNL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00847 319 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 12 310 - -
Cca04g00847 319 MobiDBLite consensus disorder prediction 101 115 - -
Cca04g00847 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 191 IPR036638 GO:0046983
Cca04g00847 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Cca04g00847 319 SMART finulus 130 179 IPR011598 GO:0046983
Cca04g00847 319 Coils Coil 170 190 - -
Cca04g00847 319 MobiDBLite consensus disorder prediction 116 135 - -
Cca04g00847 319 Pfam Helix-loop-helix DNA-binding domain 132 174 IPR011598 GO:0046983
Cca04g00847 319 MobiDBLite consensus disorder prediction 91 135 - -
Cca04g00847 319 Gene3D - 114 190 IPR036638 GO:0046983
Cca04g00847 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00847 Cca-Chr4 8793631 8795701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00847 12 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.000 7.29e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca04g00847 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00847 - - gmx:100778649 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00847 04 8793631 8795701 Cca04g00847 04 8793631 8795701 ECH
Cca10g00559 10 6076937 6078620 Cca04g00847 04 8793631 8795701 PCT