Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00846 ATGGAAACTGCGGCAGAGGTTGTTTCATCTCATTGTCTTGTTCTATCAGACTTCTCTGAATCCAGCCCCACACATCTTTCTGCTATGGAACTTGGGATTCAGAATTTTGGCTGCGCGCATTACAGGAGGAGATGCAAGATCAGGGCACCGTGTTGTGATGAGGTTTTTGATTGTAGGCATTGCCACAACGAAGCTAAGAATTCCGAGGAGCTTGATGCTGTGGATCGTCATGATATTCCACGCCATGAAATTAAGAAGGTTATCTGCTCCTTATGTGATACAGAACAAGAGGTTCAACAGTACTGTGTAAACTGTGGAGTATGCATGGGCAAGTACTTTTGTGCTATATGCAAATTCTTTGATGATGATATTTCAAAGAATCAATACCACTGTGACGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCATTGCAAGAGATGTAGATGTTGCTACTCAAAGGTGATGGAAAAGGGACATCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTATTTGATACAGTAAGAGATATCACTGTCCTACCTTGCGGCCATACTATACATTTAGATTGTGTGAAAGAGATGGAAAAACATCATAGGTACTCGTGTCCTGTTTGCTCAAAATCCATTTGTGACATGACAAGTATGTGGAAGAAGCTTGACGAAGTGATTGCCTCAACTCCAATGCCTGAAACTTACAAAAACAAGATGGTGTGGATACTTTGCAATGATTGTGGAGTAAACTCTAATGTACATTTCCATATTGTGGCTCATAAGTGCTTAAGTTGCAACTCATACAACACAAGACAGATACAAGGAATACCTGCTACATCACGCTCGTCTAGGGTGACTGAAATGGTGAGATGA 897 0.4147 METAAEVVSSHCLVLSDFSESSPTHLSAMELGIQNFGCAHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEELDAVDRHDIPRHEIKKVICSLCDTEQEVQQYCVNCGVCMGKYFCAICKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCRCCYSKVMEKGHRCVEGAMHHNCPVCFEYLFDTVRDITVLPCGHTIHLDCVKEMEKHHRYSCPVCSKSICDMTSMWKKLDEVIASTPMPETYKNKMVWILCNDCGVNSNVHFHIVAHKCLSCNSYNTRQIQGIPATSRSSRVTEMVR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00846 298 SUPERFAMILY RING/U-box 173 220 - -
Cca04g00846 298 ProSiteProfiles Zinc finger CHY-type profile. 31 107 IPR008913 GO:0008270
Cca04g00846 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 24 296 - -
Cca04g00846 298 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 296 - -
Cca04g00846 298 SUPERFAMILY Zinc hairpin stack 110 167 IPR037275 -
Cca04g00846 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 246 IPR013083 -
Cca04g00846 298 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
Cca04g00846 298 ProSiteProfiles Zinc finger CTCHY-type profile. 109 173 IPR017921 -
Cca04g00846 298 Pfam RING-type zinc-finger 174 214 IPR027370 -
Cca04g00846 298 SMART ring_2 174 216 IPR001841 -
Cca04g00846 298 Pfam Zinc-ribbon 221 279 IPR039512 -
Cca04g00846 298 Gene3D - 247 286 - -
Cca04g00846 298 SUPERFAMILY CHY zinc finger-like 35 109 IPR037274 GO:0008270
Cca04g00846 298 Pfam CHY zinc finger 38 119 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00846 Cca-Chr4 8784460 8787765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00846 34 283 C2H2 Transcription Factor Family AT3G18290 41.406 4.41e-57 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00846 K10144 - gmx:100812709 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00846 04 8784460 8787765 Cca04g00846 04 8784460 8787765 ECH