Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00844 ATGCTTGCATTGCGTTTCTCTCCTCCTCTCTACACCTCCATAACTCTTAGGGTTTCCTCTCTCTTCTCTCTCTCCTCCGCCCCTTTCCGCGCCATGTCCAAGCGCCCCTCCGCCTTCGACGCTCTCATGTCCGGCGCTCGCGCCGCCGCCAAGAAGTCTCAATCCCAGCCGGCGCAACCCTCCTCCTCTCCCAGGAAAAGAAAATCCCCGCACTCCACCTCCTCTCAAAACCCTAGCATCACCAATCCCCTCGAAAAACCTCCCAAACCTGAACCCGCCTCCTCCGAACCCGCGCCGGCACCGAAGAAAAAGTTGCTCAGCCTGTCCCTACCATCTCCCTCTTCGTCGGAGGATAACACCGCGGAGCTCAAGAAGCGAGCTTCGCTGCTGAAGAAGAAACCCTCGGATTTCGACCCGGCCTCCGTTGCTTGGTGGCAGAACGGCGAACCCGTGCCGTTCCTCTTCCTCGCATTGGCATTCGACATGATTTCCCTCGAGTCCGGGAGAATCGTCATGACGGACATCGTCTGCAACGTGCTTAGGACTGTCATGCACGTCACGCCGGAGGATCTCGTTCCCGTCATTTACCTCTCCGCCAACAAGATCGCTCCGGCGCACACCGGCCTCGAATTGGGCGTCGGCGAGGCTTCCATCATCAGGGCCCTCGCCAGCGCCTACGGAACGAACGAGGCATCTGTCAAGACTCAGTACGAGAAAAAAGGGGATTTGGGCTTGGTTGCTAAGGCGAGCCGTTCTTCGCAGAGCATGTTTAGGAAGCCTGTTGCATTGACTATTAGGAAGGTTTTGAATACTTTTCGCGTTATTGCTAAGGAATCTGGAAAAGACAGTGTAGAGAAGAAAAAAGATCTTATCAGGGCACTTCTTGTTGCTGCTACTGACTGTGAACCTCAATATCTAATCCGACTGCTACAGGCAAAGTTGCGAATTGGCTATTCTGAGAAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGCATACAACACTGAAGAACATTCTAAACCCCCTCCTGAAATTAAGTCTCCTTTAGAAGAGGCTTCAAATATTATTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAGTATCTGCACTGCTTACAGAGGGTCTATGGATGCTTCCAAAGACATGTAAATTTACTCCAGGTGTTCCAATTGAACCTATGCTGTCCAAGGCAACAAAGGGTGTATCAGAAGTTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTATGTGGAGAATGGCTCAGTTGAGGTTTACAGTAGACACCAAGAACGGAACACTGACAAGTATCCTGACGTTGTTGCTGCAGTTTCAAGGTTAAAGAAACCAACTGTATCGTCATTTGTTCTTGATTGTGAAATTGTTGCATATGATCGTGCAAAACAGCAAATCGAATCTTTCCAGAAGCTTAGTACTCGGCCTCGCAAGAAAGTAGATATCAAGGATGTAAAGGTTGATGTTTGCGTATTTGCTTTTGATCTGTTGTATCTGAATGGCCAAGAACTTCTGCAGGAAAATCTTAGAGTCCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAAACTGGATTTCTTCAGTTTGCAACATCAATAACATCAAATGATGTTGAGGAAATACAGAAATTTCTTGACAAAGCTGTTAATGCAAGTTGTGAGGGATTAATTGTTAAAACATTAAATGAAGATGCTACATATGAACCTGCCAAGCGTTCTCTCAACTGGCTAAAATTGAAGAAAGATTATCTGGAAAATATAGGGGACTCATTAGATTTGGTGCCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCATGCTATGACCAAGAAAATGAAGAATTTCAAACTATCTGTAAGATAGGAACGGGATTCTCTGAAGATAAGCTTGAAGAATGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAGACATACTATCGATATGCAGAAAAAATCAATCCTGATGTCTGGTTTGAAGCCACTGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTTACCGTGCTGCAGTGGGCATAGTAGATTCGGACAAGGGCATATCTCTTCGATTTCCACGACTACTCCGAGTCCGGCCTGACAAAGCTCCTGAACAGGCTACGTCATCTGAGCAGGTTGCTGAAATGTATAATGCTCAAAAACACAATCAAACGAACAAGCTAGATGACAGTGAAAATGATGATTGA 2307 0.4642 MLALRFSPPLYTSITLRVSSLFSLSSAPFRAMSKRPSAFDALMSGARAAAKKSQSQPAQPSSSPRKRKSPHSTSSQNPSITNPLEKPPKPEPASSEPAPAPKKKLLSLSLPSPSSSEDNTAELKKRASLLKKKPSDFDPASVAWWQNGEPVPFLFLALAFDMISLESGRIVMTDIVCNVLRTVMHVTPEDLVPVIYLSANKIAPAHTGLELGVGEASIIRALASAYGTNEASVKTQYEKKGDLGLVAKASRSSQSMFRKPVALTIRKVLNTFRVIAKESGKDSVEKKKDLIRALLVAATDCEPQYLIRLLQAKLRIGYSEKTLLAALGQAAAYNTEEHSKPPPEIKSPLEEASNIIKQVYSVLPDYDKIVSALLTEGLWMLPKTCKFTPGVPIEPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYVENGSVEVYSRHQERNTDKYPDVVAAVSRLKKPTVSSFVLDCEIVAYDRAKQQIESFQKLSTRPRKKVDIKDVKVDVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEETGFLQFATSITSNDVEEIQKFLDKAVNASCEGLIVKTLNEDATYEPAKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDQENEEFQTICKIGTGFSEDKLEECSSSLRSKVIPKPKTYYRYAEKINPDVWFEATEVWEVKAADLTISPVYRAAVGIVDSDKGISLRFPRLLRVRPDKAPEQATSSEQVAEMYNAQKHNQTNKLDDSENDD 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00844 768 Pfam DNA ligase N terminus 152 327 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca04g00844 768 ProSitePatterns ATP-dependent DNA ligase signature 2. 573 599 IPR016059 GO:0003909
Cca04g00844 768 CDD OBF_DNA_ligase_I 607 752 - -
Cca04g00844 768 PANTHER DNA LIGASE 1 53 767 - -
Cca04g00844 768 CDD Adenylation_DNA_ligase_I_Euk 384 602 - -
Cca04g00844 768 Gene3D DNA ligase/mRNA capping enzyme 424 549 - -
Cca04g00844 768 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 134 386 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca04g00844 768 SUPERFAMILY Nucleic acid-binding proteins 607 753 IPR012340 -
Cca04g00844 768 ProSiteProfiles ATP-dependent DNA ligase family profile. 501 637 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cca04g00844 768 Pfam ATP dependent DNA ligase domain 395 599 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cca04g00844 768 Pfam ATP dependent DNA ligase C terminal region 624 735 IPR012309 GO:0003910|GO:0006281|GO:0006310
Cca04g00844 768 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 387 605 - -
Cca04g00844 768 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 419 427 IPR016059 GO:0003909
Cca04g00844 768 Gene3D - 604 766 IPR012340 -
Cca04g00844 768 Coils Coil 747 767 - -
Cca04g00844 768 MobiDBLite consensus disorder prediction 44 123 - -
Cca04g00844 768 Gene3D - 128 397 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca04g00844 768 MobiDBLite consensus disorder prediction 83 97 - -
Cca04g00844 768 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 210 750 IPR000977 GO:0003910|GO:0005524|GO:0071897
Cca04g00844 768 Gene3D - 405 603 - -
Cca04g00844 768 MobiDBLite consensus disorder prediction 49 82 - -
Cca04g00844 768 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 53 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00844 Cca-Chr4 8753617 8765215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00844 1 757 Core DNA Replication Machinery Family AT1G08130 63.797 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00844 K10747 - gmx:100783155 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00844 04 8753617 8765215 Cca04g00844 04 8753617 8765215 ECH