Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00828 ATGCAGAAATTGGGTTACGGTAGCGACGGAGTATATAGGTCACTAAGGCCATCCTTGGTTCTCCCAAAGGACCCCAACGTTTCCCTCATCTCATTCCTCTTCCAAAGCGTTTCCTCTTTTCCCGCCAAAACCGCTCTCATCGATGCTCACACTTCCAAAACCCTAACTTTCGCGCAACTCAAATCCCAAGTCACGAGGCTCGCACACGGTTTCCTCAAACTAGGCATAGCCAAAAACGACGTCGTCCTCTTGCTCGCTCCCAACACCATCCACTTCCCGATATGCTTCCTCGCCGCCGCCGCGATCGGAGCCGTCGTCTCCACCGCCAATCCCCTCTACACCGTCCACGAACTCTCCAAGCAGGTCCAAGACTCCAACCCCAAGCTCCTCATCACCGTCCCCGAACTGTGGCACAAAGCCAAGGACCTCAACCTCTCCGCCGTGATTCTCGGCACCACTTTCGGTGCCGCATCGAGAGTCGTGAGTTACGACGCGATGATGGAGATGGCGGAGGCGCCGACGGAGCTGCCGGAGAGCGGCGTTCGGCAGGACGACGTGGCGGCGCTGCTGTACTCCTCCGGTACGACGGGGACGAGCAAGGGCGTGGTCCTGACGCACCGGAACTTCATCGCGGCGTCGGTGATGATCGGCATGGACGACGATTTGCTCGGCGGGGAGCGAAACGACGTGTTTCTGTGCGTTCTGCCGATGTTCCACGTGTTCGGGCTGGCGGTGGTGATGTACAGTTCGCTGCGACGAGGGAGTGCGGTGGTGGCGATGGCGAGGTTCGAGTTGGAGGCGTTTCTGAAGGCGATTGAGAGGCACAGGGTGACGAACCTCTGGCTCGTGCCTCCGATCCTGCTTGCTCTGGCGAAGCAGAGCGTGGTTCGGAAGTACGATCTTTCGTCGTTGAGGCGGATTGGTTCGGGTGCCGCTCCTCTTGGGAAGGAGTTGATGGAAGAGTGTGCCAGGCGTTTTCCACGTGTCGTCGTTATTCAGGGCTATGGTATGACAGAAACTTGTGGCATTATTTCTGTGGAGAGTCCAAGAGCAGGAATTCGACATACTGGCTCAACGGGAACGCTCGCTTCGGGAGTCGAAGCTCAAATAGCGAGTGTGGATACACAGAAGCCGCTCCCTCCTAGACAGTTGGGGGAAATATGGGTACGAGGTCCTAGCATGATGCAAGGTTATCATAACAATCCACAGGCCACAAAATTGACCATAGATGAAAAGGGATGGGTACATACAGGAGATCTTGGATATTTTGATGAAAATGGGCAACTTTATGTGGTTGACCGTATCAAAGAATTGATTAAGTACAAAGGTTTCCAGATTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTGGAGGCTGTTGTTGTCCCATATCCGGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGTTCACCCAATAGCTCGTTGACTGAGGAAGAGATTCAGAAGTTTATTGCTAATCAGGTTGCACCTTTCAAAAGATTGCGAAGGGTGACGTTCATCAGCAGTGTTCCTAAGACAGGTTCGGGTAAAATCCTCAGAAGAGAGCTTACGGCAAAAGCACGATCCAAAATATAA 1620 0.5352 MQKLGYGSDGVYRSLRPSLVLPKDPNVSLISFLFQSVSSFPAKTALIDAHTSKTLTFAQLKSQVTRLAHGFLKLGIAKNDVVLLLAPNTIHFPICFLAAAAIGAVVSTANPLYTVHELSKQVQDSNPKLLITVPELWHKAKDLNLSAVILGTTFGAASRVVSYDAMMEMAEAPTELPESGVRQDDVAALLYSSGTTGTSKGVVLTHRNFIAASVMIGMDDDLLGGERNDVFLCVLPMFHVFGLAVVMYSSLRRGSAVVAMARFELEAFLKAIERHRVTNLWLVPPILLALAKQSVVRKYDLSSLRRIGSGAAPLGKELMEECARRFPRVVVIQGYGMTETCGIISVESPRAGIRHTGSTGTLASGVEAQIASVDTQKPLPPRQLGEIWVRGPSMMQGYHNNPQATKLTIDEKGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQIAPAELEGLLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIQKFIANQVAPFKRLRRVTFISSVPKTGSGKILRRELTAKARSKI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00828 539 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Cca04g00828 539 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 538 - -
Cca04g00828 539 CDD 4CL 21 531 - -
Cca04g00828 539 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
Cca04g00828 539 Gene3D - 437 538 IPR045851 -
Cca04g00828 539 Pfam AMP-binding enzyme 35 441 IPR000873 -
Cca04g00828 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 538 - -
Cca04g00828 539 SUPERFAMILY Acetyl-CoA synthetase-like 24 537 - -
Cca04g00828 539 Gene3D - 10 436 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00828 Cca-Chr4 8497900 8504289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00828 1 539 Monolignol Biosynthesis Gene Families AT4G05160 68.073 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00828 K01904 - gmx:100808944 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00828 04 8497900 8504289 Cca04g00828 04 8497900 8504289 ECH
Cca10g00548 10 5956768 5960642 Cca04g00828 04 8497900 8504289 PCT