Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00826 ATGGTGTCCGACGCCAGCAAGATGAAGGCCGCGCAGAAGAAGGCCGCCGCCGCTGCCAAGAGAGGCGGCAAGGCCGCCGCCAAGAAAGGCGCCACCTCTTCCAAAGCCGCCGATAAGGTCGCCAATGGAATCGCCGATATTCAGATTTCGGATCGGACCTGCACCGGCGTCCTCTGTTCGCATCCTCTTTCCAGAGATATTCGGATAGAGTCTCTATCTGTTACATTCCACGGACATGATCTCATTGTTGATTCTGAATTGGAGCTCAATTATGGAAGGCGTTATGGTTTACTTGGATTGAATGGTTGTGGAAAATCTACACTGCTTACTGCAATAGGTTGCAGGGAACTTCCAATTCCCGACCACATGGATATCTATCACCTTTCCAGGGAGATTGAAGCCTCTGACATGTCTGCATTGGAAGCCGTCATAAGCTGTGACGAAGAAAGGTTACAATTGGAGAAAGAAGCTGAAGAGTTGGCTGCACAGGATGACGGAGGTGGTGAATCCCTTGAACGTATTTATGAACGATTGGATGCCCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATCTTACACGGTCTTGGTTTTGACAAGCAAATGCAGGCAAAGAAGACCCGTGATTTTTCTGGTGGCTGGAGAATGAGAATTGCTTTAGCACGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGAACGTATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAAAAAACTGAAGCTCTACACTGGTAACTATGATCAATATGTTCAGACACGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTACAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCCCGATTTGGTCATGGTTCTGCAAAACTAGCTCGCCAGGCACAGAGTAAGGAGAAAACACTGGCAAAAATGGAAAGAGGTGGACTTGCTGAGAAGGTGGTTAGAGACAAAGTTTTGGTATTCCGTTTTACTGATGTGGGAAAACTGCCTCCTCCCGTTCTTCAGTTTGTTGAGGTGGCATTTGGTTATACTCCTGATAATCTGATTTACAAGAACATTGACTTTGGGGTTGATTTAGATTCTAGGGTTGCACTGGTTGGACCAAATGGTGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGAGAGTTGATGCCTTCTGATGGCATGGTGCGTCGTCATAATCATCTTCGGATTGCCCAGTATCATCAGCATTTGGCTGAAAAGCTAGACATGGAAATGTCTGCTCTCCAGTATATGATTAAAGAATACCCTGGAAACGAGGAAGAGAAGATGAGGGCAGCAATTGGAAAGTTTGGGCTCTCTGGTAAAGCCCAGGTAATGCCAATGAAGAACTTGTCTGATGGACAAAGGAGCCGAGTGATATTTGCTTGGTTAGCTTTCAGGCAGCCTCAAATGCTTCTTTTGGATGAGCCAACGAATCATTTGGATATTGAGACTATTGACTCATTGGCGGAGGCGTTGAATGAATGGGATGGTGGCATGGTGCTTGTGAGCCATGATTTTAGGCTCATTAATCAAGTAGCCCATGAGATATGGATATGTGCTGATCAAAGTGTTACCAGATGGGAGGGTGACATTATGGAATTCAAGCAGCATCTGAAGGCAAAAGCGGGTTTATCTGACTGA 1782 0.4551 MVSDASKMKAAQKKAAAAAKRGGKAAAKKGATSSKAADKVANGIADIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLQLEKEAEELAAQDDGGGESLERIYERLDALDAATAEKRAAEILHGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFERILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVAFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELMPSDGMVRRHNHLRIAQYHQHLAEKLDMEMSALQYMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAFRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWICADQSVTRWEGDIMEFKQHLKAKAGLSD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00826 593 Gene3D - 67 331 IPR027417 -
Cca04g00826 593 CDD ABCF_EF-3 67 284 - -
Cca04g00826 593 Gene3D - 343 591 IPR027417 -
Cca04g00826 593 SMART AAA_5 91 293 IPR003593 -
Cca04g00826 593 SMART AAA_5 403 591 IPR003593 -
Cca04g00826 593 PANTHER - 1 593 - -
Cca04g00826 593 Coils Coil 143 163 - -
Cca04g00826 593 Pfam ABC transporter 394 525 IPR003439 GO:0005524
Cca04g00826 593 Pfam ABC transporter 85 239 IPR003439 GO:0005524
Cca04g00826 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 67 307 IPR003439 GO:0005524
Cca04g00826 593 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 593 - -
Cca04g00826 593 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524
Cca04g00826 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 593 IPR003439 GO:0005524
Cca04g00826 593 MobiDBLite consensus disorder prediction 1 31 - -
Cca04g00826 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 572 IPR027417 -
Cca04g00826 593 Coils Coil 285 305 - -
Cca04g00826 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 314 IPR027417 -
Cca04g00826 593 CDD ABCF_EF-3 378 569 - -
Cca04g00826 593 Pfam ABC transporter 278 354 IPR032781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00826 Cca-Chr4 8461473 8466889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00826 378 571 Calmodulin-binding Proteins AT2G36910 25.000 8.53e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00826 K06185 - gmx:100809491 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00826 04 8461473 8466889 Cca04g00826 04 8461473 8466889 ECH
Cca10g00546 10 5894746 5898876 Cca04g00826 04 8461473 8466889 PCT