Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00824 ATGCTTCATTGCTTTCATCTTCCAATGTCTCCCCACCCTGAATCATCTGACTCGAAATCGGGGAAGAAGGACTTCTCCACGGCGATTCTCGAGCGGAAGAAATCTCCGAACCGGTTAATCGTCGATGAAGCTATCAACGACGACAACTCAGTGGTTTCCATGCACCCTCAAACCATGGAAAAACTCCAACTTTTCAGAGGCGACACTATCCTCGTCAAGGGGAAGAAACGGAAGGACACGGTTTGCATTGCTCTTGCGGATGAGACTTGTGAGGAGCCGAGGGTGAGGATGAACAAGGTTGTGAGGTCGAATTTGAGGGTTCGGCTTGGAGATGTTGTGTCTGTGCATACTTGCCCTGATGTCAAGTATGGGAAGCGTGTTCATATTCTTCCCATTGATGATACCGTTGAAGGTGTCACTGGCAATCTCTTTGATGCTTACTTGAAACCTTACTTCTTGGAGGCTTATCGTCCTGTTAGAAAGGGAGATCTATTTCTTGTCCGAGGAGGGATGAGAAGTGTTGAGTTTAAGGTTATTGAAACCGATCCTGCAGAGTATTGTGTGGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAGCCTGTGAAAAGAGAGGATGAAGAAAGGCTGGATGAAGTTGGGTATGATGATGTCGGTGGTGTCAGGAAGCAGATGGCACAGATTCGAGAGCTGGTAGAGCTTCCACTGAGACATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTTTATGGACCCCCAGGCTCTGGTAAGACATTAATAGCCAGAGCTGTCGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAATGGCCCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGTAATCTCAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCTCCATCCATCATTTTTATTGATGAGATTGATTCTATTGCTCCCAAGCGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTGAAATCCCGTGCTCATGTTATTGTTATGGGAGCTACAAATCGGCCAAATAGTATTGACCCTGCACTGAGAAGGTTTGGTCGATTTGATAGGGAAATTGATATTGGTGTCCCTGATGAAGTTGGGAGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTTTCTGATGATGTTGATTTAGAGAGAATTGCAAAAGATACTCACGGATATGTTGGTGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTCTGCAATGCATCAGAGAGAAGATGGATGTCATTGATTTGGAAGATGAGACTATTGATGCTGAAGTACTGAATTCTATGGCAGTTTCAAATGAGCATTTCCATACTGCTCTAGGGATAAGCAATCCTTCTGCCTTACGAGAAACTGTTGTTGAGGTGCCTAATGTCAGCTGGGATGATATTGGAGGCCTTGAAAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAATTTGAGAAATTTGGTATGTCACCATCCAAAGGAGTTCTCTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGTCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCAGCTCCATGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCTACTCAGAGAGGAAGTAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTTACTGAAATGGATGGTATGTCTGCGAAAAAGACTGTGTTCATAATTGGAGCAACCAACAGACCTGACATCATTGACTCAGCACTTCTTCGGCCTGGTCGTCTTGATCAATTGATTTATATTCCTCTTCCTGATGAGGAGTCCCGTTATCAGATCTTCAAGGCCTGCATGAGGAAGTCGCCTGTCTCAAAAGATGTTGATTTGAGAGCACTAGCCAAGTATACTCAAGGCTTTAGTGGTGCTGATATAACAGAGATATGCCAGCGAGCCTGCAAATATGCTATTAGAGAAAACATAGAAAAGGACATAGAGCGTGAGAGGAAGAGAAACGAAAATCCTGAGGCCATGGATGAAGACATGGAGGAAGATGTTGCAGAGATCAAGGCTGCTCATTTCGAAGAGTCAATGAAGTTTGCACGTAGAAGTGTTAGCGATGCTGATATACGGAAATACCAGTCATTTGCTCAGACCTTACAGCAATCTCGGGGTTTTGGAAGTGAATTCAGGTTTCCAGAGAGTGGAGGTAGGGCCACTGGATCTGACCCCTTTGCAACTTCTGCTGGTGGGGCTGATGAAGATGATCTATATAGTTAG 2442 0.4427 MLHCFHLPMSPHPESSDSKSGKKDFSTAILERKKSPNRLIVDEAINDDNSVVSMHPQTMEKLQLFRGDTILVKGKKRKDTVCIALADETCEEPRVRMNKVVRSNLRVRLGDVVSVHTCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVSNEHFHTALGISNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEESRYQIFKACMRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERKRNENPEAMDEDMEEDVAEIKAAHFEESMKFARRSVSDADIRKYQSFAQTLQQSRGFGSEFRFPESGGRATGSDPFATSAGGADEDDLYS 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00824 813 ProSitePatterns AAA-protein family signature. 629 647 IPR003960 GO:0005524|GO:0016887
Cca04g00824 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 772 IPR027417 -
Cca04g00824 813 Pfam AAA+ lid domain 405 447 IPR041569 -
Cca04g00824 813 Pfam AAA+ lid domain 681 722 IPR041569 -
Cca04g00824 813 Gene3D - 218 382 IPR027417 -
Cca04g00824 813 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 13 789 - -
Cca04g00824 813 Gene3D - 15 120 - -
Cca04g00824 813 Pfam Cell division protein 48 (CDC48), N-terminal domain 38 119 IPR003338 -
Cca04g00824 813 SUPERFAMILY Cdc48 domain 2-like 120 212 IPR029067 -
Cca04g00824 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 473 IPR027417 -
Cca04g00824 813 SUPERFAMILY ADC-like 34 118 IPR009010 -
Cca04g00824 813 MobiDBLite consensus disorder prediction 1 25 - -
Cca04g00824 813 Gene3D - 476 659 IPR027417 -
Cca04g00824 813 Pfam Cell division protein 48 (CDC48), domain 2 140 203 IPR004201 -
Cca04g00824 813 PANTHER AAA-FAMILY ATPASE 13 789 - -
Cca04g00824 813 SMART CDC48_N_2 38 121 IPR003338 -
Cca04g00824 813 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 39 775 IPR005938 GO:0016787
Cca04g00824 813 MobiDBLite consensus disorder prediction 778 813 - -
Cca04g00824 813 CDD AAA 492 659 - -
Cca04g00824 813 SMART CDC48_2_2 138 204 IPR004201 -
Cca04g00824 813 CDD AAA 219 382 - -
Cca04g00824 813 SMART AAA_5 522 661 IPR003593 -
Cca04g00824 813 SMART AAA_5 249 385 IPR003593 -
Cca04g00824 813 Pfam ATPase family associated with various cellular activities (AAA) 253 382 IPR003959 GO:0005524|GO:0016887
Cca04g00824 813 Pfam ATPase family associated with various cellular activities (AAA) 526 659 IPR003959 GO:0005524|GO:0016887
Cca04g00824 813 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Cca04g00824 813 Gene3D - 121 217 - -
Cca04g00824 813 Gene3D - 384 475 - -
Cca04g00824 813 Gene3D - 663 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00824 Cca-Chr4 8450579 8455600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00824 455 718 Calmodulin-binding Proteins AT3G56690 48.106 1.84e-79 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00824 04 8450579 8455600 Cca04g00824 04 8450579 8455600 ECH