Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00821 ATGGGTGATATTGAGGGATCTCCAGGAAGCTCCATGCATGGAGTAACAGGAAGGGAACAAACCTTCGTAGCCTCAGTGGCTTCCCCTACGGTCCCTACAGACACCACAGCAAATTTCGCTCTACCAGTGGACTCTGAGCACAAAGCCAAGGTCTTCAAACTCTTCTCCCTCGCCAACCCTCACATGAGAACCTTCCACTTGTCATGGATATCCTTCTTCACATGCTTTGTCTCGACCTTCGCAGCAGCCCCTCTTGTCCCCATCATTCGCGACAACCTCAACCTCACCAAAGCCGACATAGGCAACGCCGGCGTGGCCTCCGTCTCCGGCAGCATCTTCTCCAGGCTCACAATGGGTGCAGTCTGTGACCTTCTCGGCCCTCGCTATGGCTGCGCCTTCCTCATCATGCTTTCTGCGCCCACCGTGTTCTGCATGTCGTTTGTGAACGATGCTGCAGGCTACATAGCGGTGAGGTTCATGATAGGGTTCTCCTTGGCCACCTTTGTGTCGTGCCAGTACTGGATGAGCACCATGTTCAATAGTAAGATCATAGGGCTTGTGAATGGGACTGCTGCAGGGTGGGGGAACATGGGTGGTGGGGCCACTCAGCTCATAATGCCTTTGGTCTATGAGTTGATCAAGAGAGCTGGGGCTACACCCTTCACTGCATGGAGGATTGCCTTCTTTGTACCTGCTTGGTTGCATGTCATCATGGGGATCTTGGTCCTAACCCTAGGCCAGGATTTGCCTGATGGCAACCTTGGTGCCTTGCAGAAGAAGGGTGATGTTGCCAAAGATAAATTCTCCAAGGTGTTATGGTATGCCATAACAAATTACAGGACATGGATTTTTGCCCTCCTCTATGGATACTCTATGGGAGTTGAATTAACCACCGACAATGTCATTGCTGAGTATTTCTATGACAGGTTCAATCTGAATCTACACACTGCTGGAATCATTGCTGCTTCATTTGGAATGGCAAATCTGCTGGCTCGCCCCTTCGGTGGATACACTTCAGATGTTGCAGCCAGATTGTTCGGCATGAGGGGCAGGCTATGGACTTTGTGGATCCTCCAAACCTTAGGAGGTGTTTTCTGCATATGGCTTGGACGTGCCAACTCACTTCCCATTGCAGTCTTGGCCATGATCCTCTTCTCCATCGGTGCTCAAGCTGCATGTGGTGCAACTTTTGGCATCATTCCTTTCATCTCAAGGCGTTCTCTGGGGATCATATCAGGCCTAACTGGTGCAGGTGGAAACTTTGGGTCTGGCTTGACCCAGTTGATCTTTTTTTCAACCTCGAAGTTCTCCACAGCAACAGGTATCTCCCTCATGGGTGTCATGATCGTGTGTTGCACTCTTCCTGTCACTCTTGTTCACTTCCCTCAGTGGGGTAGCATGTTCCTCCCTCCTTCGAAAGATGTCAACAAGTCCACTGAGGAATACTACTACACCTCTGAGTGGAATGAGGAAGAGAAGCAAAAGGGCTTGCACCAGAATAGTCTCAAGTTTGCTGAGAATAGCCGTTCTGAGAGAGGTAAGCGTGTGGCCTCAGCCCCTACACCACCAAACACAACTCCATCCCATGTCTAG 1593 0.5066 MGDIEGSPGSSMHGVTGREQTFVASVASPTVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIKRAGATPFTAWRIAFFVPAWLHVIMGILVLTLGQDLPDGNLGALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLNLHTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWTLWILQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSKFSTATGISLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVNKSTEEYYYTSEWNEEEKQKGLHQNSLKFAENSRSERGKRVASAPTPPNTTPSHV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00821 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Cca04g00821 530 SUPERFAMILY MFS general substrate transporter 59 459 IPR036259 -
Cca04g00821 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Cca04g00821 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Cca04g00821 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Cca04g00821 530 MobiDBLite consensus disorder prediction 490 513 - -
Cca04g00821 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Cca04g00821 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
Cca04g00821 530 MobiDBLite consensus disorder prediction 490 530 - -
Cca04g00821 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00821 Cca-Chr4 8433187 8436324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00821 1 530 Inorganic Solute Cotransporters AT5G60770 80.377 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00821 K02575 - gmx:100807710 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00821 04 8433187 8436324 Cca04g00821 04 8433187 8436324 ECH
Cca10g00540 10 5827449 5829370 Cca04g00821 04 8433187 8436324 PCT