Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00816 ATGGCGATGAATCTTCCTAACAAGCCAGGGAAGGTTCCTTTTGTTGTAGTTGTTGTATTAATAAGCATTATTGTTGGGCCACGGCCAGTTTTTTGTCAGAGTAGTAGTGGTGCTGGCTTTGAAATATTTGCCCAAGAAATTTATCGCAGCTTGTCAAATTATACAACTTTGTTCAAGAGTGCAATAAAAAAAGAATTGGGTTATTGCATAGTTGATGTCGATGCTGATTGGAATGGGGCGTTCAATTTCACCAAAGATCTTACCTTTTTGACTATGTGTGCCCAAGAAATGAAAGGAGATATTACACAACGCGTATGCACAGGAGGGGAAATGGAAGCTTATGCTCAAAGTTTTGCAAACGGAGACAAGTCAGGAACCAAAAGCTTCTTGAAGCCCAATAAAAATTGTAACTTGAGCTCATGGGTTGATGGTTGCGAACCTGGATGGGGTTGTAAAGCTAACGAGAAAGTAGACATCAATAGTAACAAAAAGGATATACCTACTAGATCTATCGAATGCCTACCTTGTTGTGAAGGTTTCTTTTGCCCTCGTGGTCTCACATGCATGATACCTTGCCCATTGGGCTCTTATTGTCCACGTGCAAACCTTAATAAAACTAGTGGAGTATGTGAACCATATCGTTATCAACTACCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATCTGGGCAGATATTACGAGTAGTAGTGAGGTATTCTCCTCAGCAGGATCATTTTGTCCTTCTACAATCGTAAAAAATCCTTGCAATAAGGGGTATTATTGCAGAACAGGTTCTACTACTCAGGAGCGGTGTTTCAGGCTGGCAAGTTGTGAGCCTGAGTCAGCAAATCAAAACATTACTGCATATGGTGTATTGGTTTTTGCTGGCTTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGACCAAGTTCTTGCAACTCGGGAAAGAAGACAAGCAAAATCAAGAGAAAGAGCTGCTCAAAGTGTAAGAGAATCACAAGCACGTGAAAAATGGAAATCTGCAAAAGATATTGCTAAAAAGCATGCAGTAGGATTGCAATCACAATTATCACGTACATTTTCTCGCAAACCTTCAAAGAAGTCAGATTTGAAAGGTTTTGGTTCTAAACATTCAGATTCTGCCTTACCACCTGCAACAACAGGAGGTATGGGTGCAACAAAAGGAAAGAAAAAGGACAAAAACAACCTTTCAAAAATAATAAATGATATTGAAGAAAATCCTGATAATCCAGAAGGGTTTAATGTTCAAATAGGTGATAAAAATGTCAAAAAGCAAGCACCAAGGGGTAAGCAATTACATACTCAAAGTCAAATTTTTAAGTATGCATATGGTCAAATTGAGAAGGAAAAGGCTTTAGCAGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCCAGTGATATTGAGATAAGAAAAAGACCTACCATTGAGGTTGCTTTTAAAGATTTAACCCTCACTTTGAAAGGGAAAAACAAACATCTATTGAGATGTGTGACTGGTAAATTATATCCTGGTAGAGTTTCAGCAGTAATGGGTCCATCTGGGGCTGGTAAGACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACAACTGGCCAAGTTCTTGTAAATGGTAAAGAATCATCTATCCGTTCATACAAGAAAATCATTGGCTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAGAATCTATGGTTCAGTGCTAGATGCAGACTTTCTGCTGATCTACCAAAAGAAGAAAAAGTGTTGGTGGTTGAAAGAGTCATTGAGTCATTAGGCCTACAAGCAATAAGAGATTCCTTAGTTGGAACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGATTGGAAATGGTTATGGAACCTTCCCTTCTAATTTTGGATGAACCTACATCTGGTTTGGATAGTTCATCTTCTCAACTATTGCTTAGAGCTCTTAGACGTGAAGCTCTAGAAGGAGTAAACATTTGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGATGATTTTATACTACTTGCAAAAGGAGGTCTTACAGTGTATCATGGACCAGTAAACAAAGTGGAAGAGTATTTTTCTAGCATGGGCATTAATGTCCCTGATCGTGTCAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGACCTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCTGTACCCATGGATATGCTACAAAGTGTTGAAGGAATGACAACCCCAAGTGGTGAAGGTTCATCACATGGAGCAGCATCTCTTCCACAAAATGATGAAGAAGCACCTTCATTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAGAAGGATATTCTTCATCTTAACTTCTTAAGTTCAAACGATTTGTCTGATCGGATAACACCAGGAGTGTTCAACCAGTATAAATACTTTCTTGGAAGAGTTGGTAAGCAACGACTAAGAGAAGCTAGAACACAAGCTGTGGATTTTTTGATTTTGTTACTAGCTGGCCTTTGCTTAGGAACACTTGCCAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACTGTAATAGCAGTATCACTTCTTTCTAAGATTGCGGCTTTGAGATCATTCTCATTGGATAAGTTGCACTACTGGCGAGAAAGTTCCTCAGGGATGAGTAGTTTGGCTTACTTTCTTTCAAAGGATACTGTTGACCATTTTAGCACAATTATCAAGCCATTGGTTTACCTTTCCATGTTTTATTTCTTCAATAATCCAAGATCCTCAGTCACAGATAACTACATGGTTCTATTGTGTTTAGTCTATTGTGTCACTGGCATAGCGTATGTGTTAGCAATATTTTTTCAACCAGGTCCAGCCCAACTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTTGTAGCAACCTATAATAATGAAGATAGCAAATATGTGAAATATCTATCTGACCTGTGCTACACAAAGTGGGCTCTCGAAGCATTTGTAATATCAAATGCTAAAAGATATGCTGGAGTTTGGTTGATAAGTCGATGTGGTGCGCTCTATTCTTATGGCTATGATCTTAAACATTGGTACCAATGTTTAGGCCTTCTTATCATAATGGGAATAATTAGTCGCATGCTCGCATTTTTTTGTATGATAACCTTCCAGAAGAAATAG 3306 0.3872 MAMNLPNKPGKVPFVVVVVLISIIVGPRPVFCQSSSGAGFEIFAQEIYRSLSNYTTLFKSAIKKELGYCIVDVDADWNGAFNFTKDLTFLTMCAQEMKGDITQRVCTGGEMEAYAQSFANGDKSGTKSFLKPNKNCNLSSWVDGCEPGWGCKANEKVDINSNKKDIPTRSIECLPCCEGFFCPRGLTCMIPCPLGSYCPRANLNKTSGVCEPYRYQLPPGKPNHTCGGADIWADITSSSEVFSSAGSFCPSTIVKNPCNKGYYCRTGSTTQERCFRLASCEPESANQNITAYGVLVFAGLCFLLIIIYNCSDQVLATRERRQAKSRERAAQSVRESQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKPSKKSDLKGFGSKHSDSALPPATTGGMGATKGKKKDKNNLSKIINDIEENPDNPEGFNVQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLYPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGKESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVTYKQLPVRWMLHNGYPVPMDMLQSVEGMTTPSGEGSSHGAASLPQNDEEAPSFAGELWQDVKCNVEMKKDILHLNFLSSNDLSDRITPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSSVTDNYMVLLCLVYCVTGIAYVLAIFFQPGPAQLWSVLLPVVLTLVATYNNEDSKYVKYLSDLCYTKWALEAFVISNAKRYAGVWLISRCGALYSYGYDLKHWYQCLGLLIIMGIISRMLAFFCMITFQKK 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00816 1101 Pfam ABC-2 type transporter 690 1101 IPR043926 GO:0140359
Cca04g00816 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 729 IPR027417 -
Cca04g00816 1101 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 492 733 IPR003439 GO:0005524
Cca04g00816 1101 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 34 1098 - -
Cca04g00816 1101 SMART AAA_5 518 719 IPR003593 -
Cca04g00816 1101 Pfam ABC transporter 512 661 IPR003439 GO:0005524
Cca04g00816 1101 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 34 1098 - -
Cca04g00816 1101 MobiDBLite consensus disorder prediction 785 805 - -
Cca04g00816 1101 Gene3D - 481 732 IPR027417 -
Cca04g00816 1101 ProSitePatterns ABC transporters family signature. 633 647 IPR017871 GO:0005524
Cca04g00816 1101 MobiDBLite consensus disorder prediction 785 801 - -
Cca04g00816 1101 MobiDBLite consensus disorder prediction 324 345 - -
Cca04g00816 1101 CDD ABCG_EPDR 490 716 - -
Cca04g00816 1101 MobiDBLite consensus disorder prediction 358 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00816 Cca-Chr4 8338334 8345079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00816 519 714 Calmodulin-binding Proteins AT2G36910 27.907 4.94e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00816 - - gmx:100809312 1961.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00816 04 8338334 8345079 Cca04g00816 04 8338334 8345079 ECH