Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00814 ATGAGCAGCTTAAGACCGGAATTGCATGTCGCACAACAACTTCGTCGCGATAAATTGAGGATCCAAAACAGTTCCCAAAACTTGCAACAAGATTTCCCCAACAACCTAGAACAAATATCGGGGTTCAACTTGGATCTCCTTCAAGTAAGAAACGTTCGAAATGGCAACATGCTTGACGATGCCGCAGCTCTTTATTCATCGGAAATGATAACCTTTTCAACCGCTTCAAACCCTTTATCTGCTCCCAGAAACCCTTTGGAGTGTCAAGAGCTCATGATGGCTCAGTATGGTTCAACTTCGTTCCCTCATTCATCCCCAAAAGACCAACAATGCGAACCGCGAAACTTGGGTGCTAGTTGGATGGTGAATTATAATGAAGGCAACCACAACACATTCTTCCCTTCCGAACTCAATAACAACGCTTCTGGTGAAATGGCCAACCGAGAAATTCAGAAGCAGTTAGGGGAAATGCATTATCCTCCGGCTGCAACGCCGCTTTACCATAACGCTTTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAATAACGGTGAGCCTGTGATTAATCCTAGCTATGGAACTCAAGGAAACAACGAGTTACGTTTTGGGGGTGCTAATTTGTGGACAAATAGTCCATTTGGTTTTAAAAAGATTAGCGAACAGGAACCAAATCCTCAGACTCTATCGTTGTCACTTTCATCGAACTCAAACCACAATTCCAAGCCTTGTTTTGAAGAGGGGTCAGCATCAGATGACCCTCAATATTCAAAGCCTGAGAAATCCACCATGAAGCTGAACGTTCTAGCAAACAACACTGTATATCGAAATGTTGGTCCTCTTGGTCCTTTCACCGGTTATGCAACGATTTTGAAGAGTTCAAGGTTCTTGAAGCCGTGCCAACAGTTATTAGACGAGTGGTGTTGTCAATCTGGTTCAAAATTTGTGAAGGGAGGGGTTTGTAATGTTCCAGAGTGGGTCTCTAGAGATGTCAGtgctgcttctacttctgctgctgctgatgctCTTAATGTGGAAGAAAGTGTGGCTGCTGCAGAAGGTGGTAGCAATTCGGGTGCTTCATTGTATAGTTCAAATGAAAATACTAATAGCGCCGATGGCGGAGCCGCGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCCAAACTACTGTACATGCAAGATGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCCTTTGAGTCAGTAGCGGGTCTTAGTTCTGCTACCCCTTATGTCTCCTTGGCTCTCAAGTCAGTATCGAAACACTTCAGGTGCCTAAAAAATGCAATCTCAGATCAACTGAAGCTTACATGTGAAGTATTGGGAGATGAGTTTTCAATACCAACCACAAGTACTAGTTGTAAGTTGGACAATAATATGGCAAGGTTAAGGTGCATGGACCAAAGCTTTCAAAAAAACAAATCTGGCGGGGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGGTTACCAGAACGATCGGTGGCAATTCTTAAAGCTTGGCTATTTGAGCATTTCCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACTCAAACAGGTCTATCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGCGCAACAGAAGCCCACCAAGCCTCAAGTAAAAATGATCAGGGAGCTTCTGCCTCTGAAGGTAGCAACCATCACCAACCTGTGAGCAGGTTCAGCACACATGCATCATCACATGCAATCCCTGAAAAGCAATTTCATTGTTTGGAAATGGGGTCATCCTCCTCTGCAGGCAATGAGGAACACATTGGAATGGACGAAGATCAATGGAATCAAGAGAAGAGGTCTAAACTTGAATGCCAGCTTTCCACAGCACCAAACATTGATGGCACAATGATGGGTTTTATGCCATACAGAAGAGGTGGACTTGAGGTTGGTGGTCTTGGATCAGTGTCACTGACTTTAGGGCTTAGGCACGGTGTTGAAGGTGTacaacaacaacaacagctacagcaTGAGGAGGAGCTTAGGCGTCAATTTGGAGGGCACATGATCCATGACTTTGTGGGTTAG 2193 0.4364 MSSLRPELHVAQQLRRDKLRIQNSSQNLQQDFPNNLEQISGFNLDLLQVRNVRNGNMLDDAAALYSSEMITFSTASNPLSAPRNPLECQELMMAQYGSTSFPHSSPKDQQCEPRNLGASWMVNYNEGNHNTFFPSELNNNASGEMANREIQKQLGEMHYPPAATPLYHNALQDMAYGVWGGNNGEPVINPSYGTQGNNELRFGGANLWTNSPFGFKKISEQEPNPQTLSLSLSSNSNHNSKPCFEEGSASDDPQYSKPEKSTMKLNVLANNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQSGSKFVKGGVCNVPEWVSRDVSAASTSAAADALNVEESVAAAEGGSNSGASLYSSNENTNSADGGAASSFCLSSRPECQKNKAKLLYMQDEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKNAISDQLKLTCEVLGDEFSIPTTSTSCKLDNNMARLRCMDQSFQKNKSGGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEAHQASSKNDQGASASEGSNHHQPVSRFSTHASSHAIPEKQFHCLEMGSSSSAGNEEHIGMDEDQWNQEKRSKLECQLSTAPNIDGTMMGFMPYRRGGLEVGGLGSVSLTLGLRHGVEGVQQQQQLQHEEELRRQFGGHMIHDFVG 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00814 730 SUPERFAMILY Homeodomain-like 512 576 IPR009057 -
Cca04g00814 730 CDD homeodomain 510 571 IPR001356 GO:0003677
Cca04g00814 730 MobiDBLite consensus disorder prediction 582 617 - -
Cca04g00814 730 Pfam Homeobox KN domain 527 566 IPR008422 GO:0003677|GO:0006355
Cca04g00814 730 MobiDBLite consensus disorder prediction 216 258 - -
Cca04g00814 730 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 701 - -
Cca04g00814 730 SMART HOX_1 510 574 IPR001356 GO:0003677
Cca04g00814 730 SMART prehox3 284 452 IPR006563 -
Cca04g00814 730 MobiDBLite consensus disorder prediction 584 617 - -
Cca04g00814 730 Coils Coil 11 31 - -
Cca04g00814 730 Pfam Associated with HOX 289 451 IPR006563 -
Cca04g00814 730 ProSiteProfiles 'Homeobox' domain profile. 507 570 IPR001356 GO:0003677
Cca04g00814 730 Gene3D - 513 575 - -
Cca04g00814 730 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 31 701 - -
Cca04g00814 730 MobiDBLite consensus disorder prediction 216 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00814 Cca-Chr4 8297028 8304509 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00814 225 580 Homeobox Transcription Factor Family AT5G02030 43.407 1.68e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca04g00814 POX 1.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00814 - - gmx:100793050 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00535 10 5717851 5723973 Cca04g00814 04 8297028 8304509 PCT