Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00810 ATGTGCTTAGGTGCATGCTCTGCTCAATTTCCCTACGACCCTACTAATTGTACTTCAAATGAAGCTGTGATAGAGACAAGGTACAGTTGCAACTCAACGCATGATTCATGCAAAACATTCTTGCTGTATAGAGCCAATGAACATTTCAACACCATTTCAAAAGTCTCAAAGCTCTTCAACAAGAACTCTGATGAGGTGCTTCAAATAAACAACCTCACATCTTCTTTTCACTCTCAGGTACTCAAACAAGGTAAAGAGGTTCTTATTCCTGTTGATTGCACCTGCTCTGGCAAGTATTATCAAACCAGTTTAACCTATAAAGTCCATGAAAACACCACATATTCAGATATTGCTTGTGGAGTTTTTGAAGGGCTTTTGAAACCACTCACACTTGCTGAGGAAAACCTTTCACAAGGTAACAAGGCAGAAGCTGGTTCTGAGCTTCATGTGCCTGTTACATGTGCTTGTCCTGACAGTGACAATTTCACCAGAAGCAAGAAGGTGAAGTACCTTGTCACATACCCTATAATACTGGGAGATGATCCAGAAAAATTCATCGGAAAATTTAGCATCTCACTTGAAGATTTCGCAGCAGTTAATAGCCTGAAGTTGAATCCCTTGTCAACTATATATCCAGATACAGTTGTTTTCATTCCATTAAGGGATGGTCCAATCAGAATACTTGATATTCCTGATTCTCCTTCTCCACCTCCTGGTTTTCTCCTTACAAATCCAGTGGTTATAGATCAGGAATCCACACAATCATCAAATTTGTATATTGCAGCAGGATCTGTTGTGGGGTTTTTGTTGTTCATAACATTGCTTGCAAGCGGAATGTACATGAAGAGATTGAGGAAAAGTGATGTTGTCCATTCCTTTAGTTCAACAAACTTCCCCACTTTGTGGACACCAACTAAAACCTCTACAACTTGGTGCCTATCCCCTGATCTTCTTGTTGGGATAAAGTACTATTTACTCAATTACAGCATAGAAGAGCTCCAAAAGGCCACAAAAAAATTCAGTGAAGAAAACAAGATTGGTGACTTTGTCTACAAGGGCTCAGTCAATGATCTTGAGGTGATGATAAAAAGGATGAGGTTGGAGGACACACGCCAGGTGATTGATTTACATTCTAAGATCAACCACATTAATATTGTGAACTTGCTTGGTGTTTGCTATGGTGAGAGTAATGATTCATGGTGTTATTTAGTCTTTGAGTTGCCTAAGAATGGATGCTTGAGGGACTGCTTATCTGAACCATGCAATCCTCTGAATTGGTACAAAAGGACACAAATAGCCTTTGATATTGCAACATGTATTTACTATTTGCATTGCTGTTCTTTCCCTTCTTATGCTCACATGAATGTGAGTAGTAGAAACATATTCATAACAGCATATTGGAGGGGGAAACTGGCTGATGTTGGAAGGGCATTGGCAACTAGTGCCACACTCAGCAAAAGAAATGACAGTGTAGAAATTCCCAAAGGATTGGTGGCACCAGAGTACCTCTTGCATGGATCAGTTTCTGAAAAAGTGGACATTTTTGCATTTGGGGTTGTGTTGCTAGAGTTGATCTCAGGAAGGGACAATTTTGATGGAAAAACAATGAAAGATTCCCTCGGATTTCTGTTGGGAGAAGCCAGTGAAGGGTCCTGTTTTGAAGGGTTAAGGAGTTTCATGGATCCTAATCTGAAGGATTATCCTCTTTCTGAGGCTTTATGTTTGTCTTTTTTAGCAAAAGATTGTGTGGCAGATGATCCCCTTATTAGGCCAACTATGGATGATATCATGAAAGTCCTTGCAAAAATGGTTTAG 1815 0.3978 MCLGACSAQFPYDPTNCTSNEAVIETRYSCNSTHDSCKTFLLYRANEHFNTISKVSKLFNKNSDEVLQINNLTSSFHSQVLKQGKEVLIPVDCTCSGKYYQTSLTYKVHENTTYSDIACGVFEGLLKPLTLAEENLSQGNKAEAGSELHVPVTCACPDSDNFTRSKKVKYLVTYPIILGDDPEKFIGKFSISLEDFAAVNSLKLNPLSTIYPDTVVFIPLRDGPIRILDIPDSPSPPPGFLLTNPVVIDQESTQSSNLYIAAGSVVGFLLFITLLASGMYMKRLRKSDVVHSFSSTNFPTLWTPTKTSTTWCLSPDLLVGIKYYLLNYSIEELQKATKKFSEENKIGDFVYKGSVNDLEVMIKRMRLEDTRQVIDLHSKINHINIVNLLGVCYGESNDSWCYLVFELPKNGCLRDCLSEPCNPLNWYKRTQIAFDIATCIYYLHCCSFPSYAHMNVSSRNIFITAYWRGKLADVGRALATSATLSKRNDSVEIPKGLVAPEYLLHGSVSEKVDIFAFGVVLLELISGRDNFDGKTMKDSLGFLLGEASEGSCFEGLRSFMDPNLKDYPLSEALCLSFLAKDCVADDPLIRPTMDDIMKVLAKMV 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00810 604 Gene3D Transferase(Phosphotransferase) domain 1 409 604 - -
Cca04g00810 604 Pfam Protein tyrosine and serine/threonine kinase 357 539 IPR001245 GO:0004672|GO:0006468
Cca04g00810 604 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 603 - -
Cca04g00810 604 Gene3D Phosphorylase Kinase; domain 1 321 406 - -
Cca04g00810 604 ProSiteProfiles Protein kinase domain profile. 269 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00810 604 SUPERFAMILY Protein kinase-like (PK-like) 322 600 IPR011009 -
Cca04g00810 604 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 1 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00810 Cca-Chr4 8254087 8255901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00810 6 604 Receptor kinase-like Gene Family AT2G23770 29.721 5.43e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca04g00810 PK_Tyr_Ser-Thr 1.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00810 - - gmx:100818937 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00810 04 8254087 8255901 Cca04g00810 04 8254087 8255901 ECH