Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00808 ATGCGGAGCGATCCGTTAAAGTGGGGTGTGGCTGCGGAAGCATTGAAAGGGAGCCACGTGGAGGAAGTGAAGGCGATGGTGAGGGATTTCCGGGGGAAGGAGGTGAGGCTGGGCGGCGAGAGCATGAGGGTGGGGCACGTggcggcggtggcggcgtcgacggcgaaggtggcggtgaaggaggcgATGAGGAAGGGAGTGAATGCGAGCAGCGAGTGGGTGATGGAGTGCTTGAAGGAAGGGTGGGATTGTTATGGGGTCACAACGGGCTTCGGTGCCACCTCACACAGGAGAACCTCTCACTTTAGGCCTTTGCAAATTGAACTCATTAGGTTTCTGAATGCTGGAATTTTCGGAAACGGGACAGATCAAACTTGCCATACCTTGCCACACAGTGTTACAAGAGCTGCAATGCTCGTGAGAATCAACACCCTTCTTCAAGGCTACTCTGGCATCAGATTTGAGATCCTAGAAGCCATTGTAAAACTACTCAACCACAACATCACACCATGTTTGCCCTTGCGTGGTTCAATTTCAGCCTCAGGTGACTTGGTTCCATTTTCATACATAGCTGGACTCCTCACAGGAAGGCCTAACTCAAAGGCCGTTGGTCCCAATGGTGAAACCCTAAGTGCTGAAGAAGCCTTCCATCTTGCTTCTATTGGGGAACACTTCTTTGAGTTGCAACCTAAAGAGGGTCTTGCACTTGTTAATGGAACTGGAGTTTGTGCTGGTTTGGCCTCTCTAGTTCTATTTGAGGCTAACATCTTAACCATCTTATCTGAAGTCATGTCTGCAATTTTTGCTGAGGTCATGCAAGGAAAGCCCGAGTTCACAGACCATTTGGCACACAAACTGAAGCACCATCCCGGTCAGATTGAAGCAGCAGCAGTGATGGAACACATCTTGCATGGAAGTGCTTATGTTAAAGCAGCACAAAATTTTCATGAGATAGATCCTGTACAAAAGCCTAAGCAAGATAGATATGCTCTTAGAACTTCACCACAGTGGTTAGGTCCTCAAATTGAGGTTATAAGGCAAGCCACAAAATCCATTGAGAGGGAGATAAACTCGGTTAATGATAACCCTTTGATCGATGTGTCAAGGAACAAAGCTTTGCATGGTGGCAATTTTCAAGGTACCCCAGTTGGGGTTTCAATGGACAACACAAGATTAGCCTTGGCAGCCATTGGAAAACTCCTCTTTGCTCAAATGTCTGAGCTGGTAAATGATTTCTACAATAATGGTTTGCCTTCAAATCTCTCGGGGGGTCCTTGTCCAAGCTTGGATTATGGATTCAAGGGTGGGGAGATAGCAATGGCTGCATATTGTTCTGAGCTTCAGTATCTTGCAAACCCTGTCACTAATCATGTACAAAGTGCTGAACAACACAACCAAGATGTGAACTCGTTGGGACTGATCTCTTCCAGGAAGACATCTGAAGCAGTAGAAATATTGAAGCTCATGAGTTCAACCTACCTCGTTGCACTTTGTCAAGCTATAGACTTGAGGCACTTGGAGGTGAATTTGAAGAACACGGTTAAAAACACGGTGAGCCAAGTGGCTAGAAAGGTCTTAACCTTGGGCGTTGATGGGGAGCTTCATCCCTCTAGATTTTGTGAGAAAGATTTGCTCAAAGTGGTTGATCGTGAGTATGTTTTTGCCTACATTGATGACCCGTGTAATGCCACGTATCCACTCATGCAAAAACTAAGGCAAGTGTTGGTGGACCATGCATTGCTGAGTCATGATGGTTTGGAAAGTAGAGATGCTTCCATGTTCCTGAAGATAGGTTCTTTTGAAGAGGCACTGAAGAATGTGTTGCCCAAAGAGGTTGAGTGCACATGGAATGGCTTTGAGAGACGGAGTTTACCTATCCCTAATAAAATTAAGGAGTGCAGATCCTATCCACTTTATAAATTTGTGAGGGAGGAATTAGGAACTGAGTTTCTAACTGGGGAGAAAGTTAAGTCCCCTGGAGAAGATTTTGATAAAGTTTTCAATGCAATTAACCAAGGAATGATGATAGACCCACTGTTTGAATGCCTCAAAGATTGGGATGGTGCTCCTCTTCCTATACGTGGGGAACCCATGATAGACTGA 2103 0.4446 MRSDPLKWGVAAEALKGSHVEEVKAMVRDFRGKEVRLGGESMRVGHVAAVAASTAKVAVKEAMRKGVNASSEWVMECLKEGWDCYGVTTGFGATSHRRTSHFRPLQIELIRFLNAGIFGNGTDQTCHTLPHSVTRAAMLVRINTLLQGYSGIRFEILEAIVKLLNHNITPCLPLRGSISASGDLVPFSYIAGLLTGRPNSKAVGPNGETLSAEEAFHLASIGEHFFELQPKEGLALVNGTGVCAGLASLVLFEANILTILSEVMSAIFAEVMQGKPEFTDHLAHKLKHHPGQIEAAAVMEHILHGSAYVKAAQNFHEIDPVQKPKQDRYALRTSPQWLGPQIEVIRQATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPVGVSMDNTRLALAAIGKLLFAQMSELVNDFYNNGLPSNLSGGPCPSLDYGFKGGEIAMAAYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSSTYLVALCQAIDLRHLEVNLKNTVKNTVSQVARKVLTLGVDGELHPSRFCEKDLLKVVDREYVFAYIDDPCNATYPLMQKLRQVLVDHALLSHDGLESRDASMFLKIGSFEEALKNVLPKEVECTWNGFERRSLPIPNKIKECRSYPLYKFVREELGTEFLTGEKVKSPGEDFDKVFNAINQGMMIDPLFECLKDWDGAPLPIRGEPMID 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00808 700 SUPERFAMILY L-aspartase-like 4 693 IPR008948 GO:0003824
Cca04g00808 700 CDD PAL-HAL 40 504 IPR001106 -
Cca04g00808 700 Gene3D - 507 628 IPR023144 -
Cca04g00808 700 PANTHER AMMONIA-LYASE, PUTATIVE-RELATED 3 693 - -
Cca04g00808 700 Gene3D - 1 240 IPR024083 -
Cca04g00808 700 Gene3D Fumarase/aspartase (Central domain) 242 688 - -
Cca04g00808 700 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 4 684 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cca04g00808 700 Pfam Aromatic amino acid lyase 44 513 IPR001106 -
Cca04g00808 700 PANTHER HISTIDINE AMMONIA-LYASE 3 693 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00808 Cca-Chr4 8217160 8222429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00808 3 693 Monolignol Biosynthesis Gene Families AT3G53260 75.036 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00808 K10775 - vvi:100241575 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00808 04 8217160 8222429 Cca04g00808 04 8217160 8222429 ECH