Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00804 ATGGGAAGCAAATGGAGAAAATTGAAGCTTGTTCTTGGATTGGATTCCTGCGTTCACATTCCTAGAGCCTTTGATGActcctcctcctcctcctccgccGCAGCAAGATTCTCCGGCGGCATCTCCCCCGCCGTCGTCTCGCCGCCCGGTGACACCTCCGGCTACCGCCCCTCCACCCCAACACCGTCGTCTTCTGGCCTCCGGTTACCCAAATCCGGACCCAAGTCACCTAAGGGGACATGTGCTATATGCCTTTACACAATGAAACCAGGGCAGGGCCATGCCATTTTCACTGCAGAATGTTCTCACTCTTTCCATTTTCACTGCATCACTTCAAATGTGAAACACGGGAACCAGATTTGCCCCGTCTGCCGAGCAAAATGGAAAGAAGTTCCGTTTCAAAGCCCTGCTTCTAATATTCCCCATGACATGGCTCGTATCAACCAAGTATCTCCTCGAGATGAAGGCTGGACAACTGTCATTCGGAGGCTTCCTTCTCCTCAAGGTGAGGCTGGTCGGCAGATTTCATCGCTTTATCATGTTACCGAACCAGCTGTTTTTGATGATGATGAAGCCCTGGATCAACAAACTATAATTAGCCCTCATAAAAATGAGACTGATCACAATGTAGTAAATACAGTGGAGATCAAAACATATCCTGAGGTTTCAGCTGTTCCAAAATCAGCCGCTCATGATGCCTTCGCTGTACTAATTCATCTCAAAGCTCCTCATTCAGGGACAAAACCTGATATTGATGGAAACAGTACTGGATCATCACCTGTTGAGAACTCTCGTGCCTCGGTTGACCTTGTTACAGTTCTTGATGTTAGTGGCAGCATGGCGGGTACTAAGCTAGCATTGCTAAAACGGGCGATGGGTTTCGTCATTCAGAATCTTGGTCCATCAGACCGGCTGTCTGTCATTGCCTTCTCCTCCACAGCACGTCGCATCTTTCCTCTTCGGCAGATGACTGACACTGGACGACAGCAGGCATTACAGGCTGTCAATTCTTTGGTTTCAAATGGTGGGACAAACATTGCTGAAGGCTTGAGGAAAGGCGCCAAGGTGTTTGCTGACCGGCGGTGGAAGAACTCAGTTTGCAGCATCATATTACTCTCTGATGGACAGGATACATACACAGTCAATAGCAGGCCAAATAGTGGAACAGATTACCAGTCACTTGTTCCAAACTCCATTCATCGTAACAATGGTATGGGAATGCAGATACCAGTGCATGCATTTGGCTTTGGCAGTGACCATGATGCTACTTCAATGCATTCAATCTCTGAGATATCTGGGGGTACGTTTTCTTTTATCGAAGCCGAGGATGTCATTCAGGATGCATTTGCACAGTGTATTGGGGGACTCTTGAGTGTGGTGGTGCAAGAACTACAAGTAGAAGTTGAATGTGTCCACCCACATTTGCAACTTAGTTCGGTAAAAGCAGGAAGTTACCAAACAAGCTTGGTGGCGAATGCAAGATTGGCTACTATCAATGTAGGAGATTTGTATGCTGAAGAGGAAAGGGACTTTTTGGTGACAGTTAATGTTCCGGTTGATAAATCAAGTGATGAGATGTCATTATTGATTGTGCGAGGTCTTTACCGAGATTCCATAACAAAAGAAATGGTGGCTTTGGAAGAAGCTAGTGAAGTAAAAATTCAGAGACCTGATGTAAGAAATGGAGAACTTGTTGTGTCAATAGAGGTAGACAGACAGCGAAACAGGCTTCGAGCTGCTGAGGCAATGTCTGAGGCTAGAGTTGCAGCCGAACGTGGTGATTTGTCAACTGCAGTTTCGGTCCTGGACACCTGTCATAAGGCGTTATCTGAAACTGTTTCTGCTCAAGCCGGGGATCGGTTGTGTGTTTCTCTTTCTGCAGAGTTGAAGGAGATGCAGGAGAGGATGGCAAATCAACGCATATATGAGCAGTCTGGAAGGGCTTATGTTCTGTCCGGATTGAGTTCACATTCTTGGCAAAGGGCAACAGCTCGTGGCGATTCCACAGACAGCTCCAGCCTTGTGCAATCATACCAAACTCCTTCCATGGTTGACATGGTGACCCGTTCACAGACCATGGTATTTGGGGCGCCGCAAAATAAACGTGTCCTCAGGCCTGCTAAATCATTTCCTGAGAGGCAGAGAAGGCAATAA 2154 0.4656 MGSKWRKLKLVLGLDSCVHIPRAFDDSSSSSSAAARFSGGISPAVVSPPGDTSGYRPSTPTPSSSGLRLPKSGPKSPKGTCAICLYTMKPGQGHAIFTAECSHSFHFHCITSNVKHGNQICPVCRAKWKEVPFQSPASNIPHDMARINQVSPRDEGWTTVIRRLPSPQGEAGRQISSLYHVTEPAVFDDDEALDQQTIISPHKNETDHNVVNTVEIKTYPEVSAVPKSAAHDAFAVLIHLKAPHSGTKPDIDGNSTGSSPVENSRASVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRIFPLRQMTDTGRQQALQAVNSLVSNGGTNIAEGLRKGAKVFADRRWKNSVCSIILLSDGQDTYTVNSRPNSGTDYQSLVPNSIHRNNGMGMQIPVHAFGFGSDHDATSMHSISEISGGTFSFIEAEDVIQDAFAQCIGGLLSVVVQELQVEVECVHPHLQLSSVKAGSYQTSLVANARLATINVGDLYAEEERDFLVTVNVPVDKSSDEMSLLIVRGLYRDSITKEMVALEEASEVKIQRPDVRNGELVVSIEVDRQRNRLRAAEAMSEARVAAERGDLSTAVSVLDTCHKALSETVSAQAGDRLCVSLSAELKEMQERMANQRIYEQSGRAYVLSGLSSHSWQRATARGDSTDSSSLVQSYQTPSMVDMVTRSQTMVFGAPQNKRVLRPAKSFPERQRRQ 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00804 717 MobiDBLite consensus disorder prediction 41 75 - -
Cca04g00804 717 SMART ring_2 81 124 IPR001841 -
Cca04g00804 717 PANTHER RETROELEMENT POL POLYPROTEIN-LIKE 3 716 - -
Cca04g00804 717 SUPERFAMILY RING/U-box 79 132 - -
Cca04g00804 717 SMART VWA_4 267 449 IPR002035 -
Cca04g00804 717 Pfam RING-like zinc finger 81 110 IPR001841 -
Cca04g00804 717 ProSiteProfiles VWFA domain profile. 269 453 IPR002035 -
Cca04g00804 717 Pfam von Willebrand factor type A domain 269 450 IPR002035 -
Cca04g00804 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 133 IPR013083 -
Cca04g00804 717 SUPERFAMILY vWA-like 270 484 IPR036465 -
Cca04g00804 717 Gene3D von Willebrand factor, type A domain 269 454 IPR036465 -
Cca04g00804 717 CDD RING-H2 81 125 - -
Cca04g00804 717 ProSiteProfiles Zinc finger RING-type profile. 81 125 IPR001841 -
Cca04g00804 717 Pfam VWA / Hh protein intein-like 619 692 IPR032838 -
Cca04g00804 717 MobiDBLite consensus disorder prediction 52 70 - -
Cca04g00804 717 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 716 - -
Cca04g00804 717 CDD vWA_C3HC4_type 268 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00804 Cca-Chr4 8127487 8132787 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00804 - - gmx:100818406 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00804 04 8127487 8132787 Cca04g00804 04 8127487 8132787 ECH
Cca10g00531 10 5617048 5630228 Cca04g00804 04 8127487 8132787 ECH