Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00803 ATGAAGTCGCAGCTCAAAATTGCTCTTGCTTTAGTTATTAGCTTTCTATGGATTCAGCACTCATTTTGTGATGAAACTTCTGATACATCTAGCTTAAACAAGTGGAGATGTAGATGTTCTTTCCAAGGGAACCAGAGCTACTCTCTTGCTAATTGTTCAAAGTCATGTGATTGCCACTCAGATGCTGAAGAGAGTGCATCTGTATGGACATGCATATGTGATCCCAATGGATTTCCCAGAGTGGCAGCAGATGGTCATAGCCCTAATTGCTTCAACGCTTGCAACTGCACCTGGGGAACTGTCAGCATGCCAGGAGGTCCAAAGAAACATGTTTCCAGCAAGATTGTTGTAGTTATACTATTAATATGTGTTATATGCACAACCATTGCATTTCTTGTCTCAGTTGTATGCTATGTCTACCGAAGGGACAGATGTACTATTCAATCACCAATATTCTCAGCAGATAAGGAAACAAGTAGTGGTAGTACTACCAATTTAATTAGTCATAGGTCAGGCACTTCTTCAGTGCCAGAAACAAAATTTGCAATAAATTCTTCAATTTGTCATATTTCAGGATGCTTTCAGAAAGCCTCTTTCTTATTTGGGAGCCCAAAAGAAACTTATCATGGAAATATTATTCAATTTTCATTAGCTGAACTGGAAAATGCCACTGAAAACTTTTCATCTTCCAACCTAATTGGGCTAGGTGGAAGTAGTTATGTATACCTAGGTCGGTTGAAAGATGGTAGCAATGTGGCAGTTAAACGACTAAAAGATCAGGGATGGCCAGAAGTAGACTCTGCATTTTTCAAGGAGATTGAACTATTATCTAGACTTCATCATTGCCATTTGGTGCCTTTGCTTGGATACTGCTCAGAGTTAAAAGGAAAACATGTTCAAAGGTTACTGGTATTTGACTACATGGCTAATGGAAATTTGAGGGACTGTTTAGATGGAGTTTCTGGAAAACATATCGATTGGGCTACTCGTGTCATGATTGCAATAGGAGCTGCAAGGGGCTTGGAGTATCTCCACGAAGCGGCTGCTCCCAGAATTCTTCATAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAGGTATGGATCTTGTTTGTCTGGATGGTAGTAGCAAATTGGGATTTATTTTAG 1164 0.3952 MKSQLKIALALVISFLWIQHSFCDETSDTSSLNKWRCRCSFQGNQSYSLANCSKSCDCHSDAEESASVWTCICDPNGFPRVAADGHSPNCFNACNCTWGTVSMPGGPKKHVSSKIVVVILLICVICTTIAFLVSVVCYVYRRDRCTIQSPIFSADKETSSGSTTNLISHRSGTSSVPETKFAINSSICHISGCFQKASFLFGSPKETYHGNIIQFSLAELENATENFSSSNLIGLGGSSYVYLGRLKDGSNVAVKRLKDQGWPEVDSAFFKEIELLSRLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGVSGKHIDWATRVMIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKVWILFVWMVVANWDLF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00803 387 ProSiteProfiles Protein kinase domain profile. 227 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00803 387 Gene3D Transferase(Phosphotransferase) domain 1 308 375 - -
Cca04g00803 387 Gene3D Phosphorylase Kinase; domain 1 202 307 - -
Cca04g00803 387 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 372 - -
Cca04g00803 387 PANTHER OS01G0253100 PROTEIN 2 372 IPR045271 GO:0004714|GO:0006468
Cca04g00803 387 SUPERFAMILY Protein kinase-like (PK-like) 207 372 IPR011009 -
Cca04g00803 387 SMART serkin_6 227 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00803 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Cca04g00803 387 Pfam Protein tyrosine and serine/threonine kinase 231 372 IPR001245 GO:0004672|GO:0006468
Cca04g00803 387 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00803 Cca-Chr4 8117984 8124491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00803 1 372 Receptor kinase-like Gene Family AT2G28250 48.663 6.91e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Cca04g00803 PK_Tyr_Ser-Thr 2.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00803 - - gmx:100817870 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00803 04 8117984 8124491 Cca04g00803 04 8117984 8124491 ECH
Cca10g00531 10 5617048 5630228 Cca04g00803 04 8117984 8124491 PCT