Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00801 ATGGCTTCTGATTGTTCAAGATTTGTAAGATTTCAAGATGATGTTGAATTAGCAAAATTGCCAACAACAATTGGTGGCAATAGAATCAAGCTTAATGGAACACAAGTAGCTGAGACTAGTGGCAAAAAGGCTCACTCCACTAGGAAGACAGGGAAGTTCTTGAAGGCTAGAGTGTTGTCAAGAGTATTCTCAGAGGATTATGAGAGAGTTAGAAAAAGAACATTACTGGATCCCCGGGGACAAACCATTCACCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTCTATTCTTTTATTTGCCACTAGTTCGAGATGAGGTGTGCATTGATATTGGAACAGCACTTGAAGTTTTCCTCACAATGATAagatcagtggcagatgtgttttacatgattcagattctcatgaagtttcgaacggcttatgtagctccttcttctagggtatttgggaggggagaacttgttatagactcttctaagatagctactagatacctgagcaagggtttttggttagacttcattgctgcattgcctcttcctcagGTTTTAATTTGGATTGTGATTCCCAATCTTGGGGGTTCAACCATGGCAAACACAAAGAATGTGCTTCGCTTTATCATTATTTtccaatatttgccaaggctgtttctgatttttccactttcatcccaaattataaaagctacaggggttgtgacagaaacagcatgggcaggagctgcttacaacttggtcctatacatgttggctagtcatTTTTTAGGAGCTAGCTGGTACCTTCTATCAATTGAGCGACAAGAAGCATGCTGGAGGAGTATATGCGATATGGAGTGGTCATATTGTGAATATGGATTTTTTGATTGTAAAAGGGTTGAAGATCCCCTCAGGGCCTCCTGGTTTATGGCTAGTAATGTCACAATTTTATGCTCACCGAAGTCTAACTTCTATCAGTTTGGTATATACGGTGATGCAGTGACATCCCAAGTTACAACCTCGCCATTCTTCGATAAGTACTTCTTTTGTCTGTGGTGGGGTCTTAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGAACTTTTATTGGAGAAATAATGTTCGCCATTGTTGTTGCCACCTTTGGATTGGTTCTTTTTGCTTTGCTGATTGGTAATATGCAGACATACCTCCAATCAACAACTGTCCGTTTAGAAGAGTGGAGGGTGAAGAGAACTGATACAGAACAATGGATGCATCACAGACAACTTCCTGCAGAACTAAGACAATCTGTGCGTAAATACAACCAATATAAATGGCTAGCCACCCGAGGGGTAGATGAAGAAGCTCTCCTCAAAGGACTTCCAGCGGATCTTCGAAGAGACATCAAGCGTCACCTTTGTCTTGAACTAGTTCGACGAGTTCCACTGTTGGATCAAATGGAGGAGAGGATGGTGGACGCAATATGCGAGAGGCTGAAGCCGGCACTGTGCACGGAGAGCACGTATCTGGTTCGGGAGGGTGACCCGGTGAACGAGATGCTGTTCATAATCAGAGGGCACCTGGATTCCTACACCACGAACGGAGGGCGCAGCGGTTTCTTCAACTCGTGCCGCATCGGGCCGGGGGACTTCTGCGGCGAGGAGCTGCTGACGTGGGCCCTGGGGCCGCGGCCCAGCTTCACGCTGCCGTCGTCGACGCGAAGCGTGAAGGCGATATCGGAGGTGGAGGCGTTCGCCCTGACGGCGGAGGACCTTCGGTTCGTGGCGTCTCAGTTCCGTCGGCTGCACAGCAAGCAGGTTCGGCACAAGTTCAGGTTTTACTCCCACCAGTGGAGGACTTGGGCTGCGTGCTTCGTGCAGGCTGCGTGGAGACGCTACAAGAAGAGGAAGCAAGCCAAGGCTGTGCCATTGCCATATGTCAGGAAGGATTCTGGTCTTGTTGTTAACTCCTTGCCCAAGCCCCAAGAACCTGATTTTTCTCTTGATCACTGA 1998 0.3974 MASDCSRFVRFQDDVELAKLPTTIGGNRIKLNGTQVAETSGKKAHSTRKTGKFLKARVLSRVFSEDYERVRKRTLLDPRGQTIHRWNKIFLVACLVSLFVDPLFFYLPLVRDEVCIDIGTALEVFLTMIRSVADVFYMIQILMKFRTAYVAPSSRVFGRGELVIDSSKIATRYLSKGFWLDFIAALPLPQVLIWIVIPNLGGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIIKATGVVTETAWAGAAYNLVLYMLASHFLGASWYLLSIERQEACWRSICDMEWSYCEYGFFDCKRVEDPLRASWFMASNVTILCSPKSNFYQFGIYGDAVTSQVTTSPFFDKYFFCLWWGLRNLSSLGQGLLTRTFIGEIMFAIVVATFGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPAELRQSVRKYNQYKWLATRGVDEEALLKGLPADLRRDIKRHLCLELVRRVPLLDQMEERMVDAICERLKPALCTESTYLVREGDPVNEMLFIIRGHLDSYTTNGGRSGFFNSCRIGPGDFCGEELLTWALGPRPSFTLPSSTRSVKAISEVEAFALTAEDLRFVASQFRRLHSKQVRHKFRFYSHQWRTWAACFVQAAWRRYKKRKQAKAVPLPYVRKDSGLVVNSLPKPQEPDFSLDH 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00801 665 Gene3D Helix hairpin bin 405 469 - -
Cca04g00801 665 ProSiteProfiles cAMP/cGMP binding motif profile. 478 561 IPR000595 -
Cca04g00801 665 Pfam Cyclic nucleotide-binding domain 503 590 IPR000595 -
Cca04g00801 665 Pfam Ion transport protein 86 405 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca04g00801 665 Gene3D - 89 402 - -
Cca04g00801 665 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 640 - -
Cca04g00801 665 SMART cnmp_10 478 609 IPR000595 -
Cca04g00801 665 CDD CAP_ED 478 609 IPR000595 -
Cca04g00801 665 SUPERFAMILY Voltage-gated potassium channels 77 400 - -
Cca04g00801 665 SUPERFAMILY cAMP-binding domain-like 408 601 IPR018490 -
Cca04g00801 665 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED 46 640 - -
Cca04g00801 665 PRINTS EAG/ELK/ERG potassium channel family signature 141 150 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g00801 665 PRINTS EAG/ELK/ERG potassium channel family signature 258 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g00801 665 PRINTS EAG/ELK/ERG potassium channel family signature 347 364 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g00801 665 PRINTS EAG/ELK/ERG potassium channel family signature 373 384 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g00801 665 PRINTS EAG/ELK/ERG potassium channel family signature 391 400 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g00801 665 PRINTS EAG/ELK/ERG potassium channel family signature 441 448 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g00801 665 Gene3D Jelly Rolls 476 596 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00801 Cca-Chr4 8046031 8050783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00801 51 662 Ion Channels AT2G28260 75.197 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00801 K05391 - gmx:100791992 1184.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00801 04 8046031 8050783 Cca04g00801 04 8046031 8050783 ECH
Cca10g00530 10 5608226 5612458 Cca04g00801 04 8046031 8050783 PCT