Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00799 ATGAAGTCTTTGCTTCATGATGTCCTTCTGTTGGCTAATAGAGATACTAGGTATAGTAGGGGTCAGAATATCATTGAGAGCAGTGATTCTTATGACATGGAAGATTTTGCAATGCCATTACAAGAATACATCAATCATCCTGTGGCTTTGGATGTTGTACATAATGGAGCCACATTCCAGGTTGCAGGTTTGACAAACAATTCTTATATAGCAGAAGCACATGAAGTGCGCCATTGTATACAGAAATACAAGACTCTCGGTAAATATGTGCTAGATGTTGCGAAGAAGAGACTGGATGATATGTTATACGTTGGTCTTACTGAGGAGCACAGAGAATCTGCAACGAGGTTTGCAAATGTGGTTGGTACTCAAGTGATATCACAGCTTAATGCACCAAACACTAGCTTGGAAACTACTGATAATACAGAAAAGAGATCATTTTCGGATTCTGATCCTGATATCAGTCAACATAAGAATAGCACCTCAGACGGGGGAGTAAGTGAGGTTACTTCAAGTGAAGGTGGAGAAGCAACAGAATCTAATATGACGGCTGGAGAACTAATGGATGCTTATGAAGTCTGTATTTCCAATTTACGGAAGGCCCAGTCACGTCGACGTGTCTCTTCTTTGAAGAAGATTTCTCCTGTGAACTTTACAAAGGAGGCACGTCTTCAGGTTCCTGAAAAGGTTCTCGATGAGATACGTATTTATGTGTATATCCATGATAAATTGATAATCTTATTAGATCTCTCTGCTCGTGGAAGGAGAGTTGGGACATATCAAGCAGTGCATATGGCCTCTGGAGGCTGTCACCGTATTGTAAACATGAAGGACTGTTTGTTTTTTGACAAGAATTTCAATGGTTTGTCGGATAAGATTCTTGATGATGTCCTCGAGTTATTTGATTTCCCCCTTGAGGATGTGGAAACTGATGCTGGTGTGGACCTAGATTGGGATGCTGAGTTCAAACTCCTTGAAGAGCCATCACTTGGGATTTTTTCTCTAGCGAAGACTGGCGAACCTACACATGGCAAAACTATTCCTATCCAGAATGCCTCTTTAAATGGAAAAGATTTGCAGCAACTCCAAACCAACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGCTCTCCCTCAGTTGGGAATTCCAACTCTGAGTTACCTGTTGTCCCTACGAATCATCCTCGAGGCAAACGAGGCAGACGCCAGCGTCTCTCAAACATCAATCTGCTATACTATGTTCCTGTCAACTTAACTCCACCAGATTTTCAAAGGATAGCCGTCTCTGAATCAGATTTGCCAACACATTCTGCTGGGAAATTAATATACATAGTCAAAAAGCAGCAGAGGAGAAAAGACATTTCCTTGCCAACGTACAAAATTGAGATGAAGAGATCATCATCACAAGAGTCAGTTGCAACCAGAAAATGCATGCATTGTGAGGTGACAAGCACGCCTCAATGGAGAGAGGGACCAATGGGTCCTAAGACCCTATGCAATGCTTGCGGGGTTCGGTATCGGTCTGGACGGCTCTTTGCTGAATACCGGCCGGCAGCTAGCCCCACTTTTGTAGCATCATTGCACTCAAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCAACCCAGGAGAGTGTTAGATAA 1644 0.4258 MKSLLHDVLLLANRDTRYSRGQNIIESSDSYDMEDFAMPLQEYINHPVALDVVHNGATFQVAGLTNNSYIAEAHEVRHCIQKYKTLGKYVLDVAKKRLDDMLYVGLTEEHRESATRFANVVGTQVISQLNAPNTSLETTDNTEKRSFSDSDPDISQHKNSTSDGGVSEVTSSEGGEATESNMTAGELMDAYEVCISNLRKAQSRRRVSSLKKISPVNFTKEARLQVPEKVLDEIRIYVYIHDKLIILLDLSARGRRVGTYQAVHMASGGCHRIVNMKDCLFFDKNFNGLSDKILDDVLELFDFPLEDVETDAGVDLDWDAEFKLLEEPSLGIFSLAKTGEPTHGKTIPIQNASLNGKDLQQLQTNSPVSVFESSSSPSVGNSNSELPVVPTNHPRGKRGRRQRLSNINLLYYVPVNLTPPDFQRIAVSESDLPTHSAGKLIYIVKKQQRRKDISLPTYKIEMKRSSSQESVATRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVASLHSNSHKKVLEIRNRATQESVR 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00799 547 Pfam GATA zinc finger 476 509 IPR000679 GO:0006355|GO:0043565
Cca04g00799 547 Gene3D - 470 520 IPR013088 GO:0006355|GO:0008270
Cca04g00799 547 ProSiteProfiles GATA-type zinc finger domain profile. 470 506 IPR000679 GO:0006355|GO:0043565
Cca04g00799 547 ProSitePatterns GATA-type zinc finger domain. 476 501 IPR000679 GO:0006355|GO:0043565
Cca04g00799 547 MobiDBLite consensus disorder prediction 370 389 - -
Cca04g00799 547 CDD ZnF_GATA 475 522 IPR000679 GO:0006355|GO:0043565
Cca04g00799 547 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 472 532 - -
Cca04g00799 547 SMART GATA_3 470 520 IPR000679 GO:0006355|GO:0043565
Cca04g00799 547 MobiDBLite consensus disorder prediction 131 182 - -
Cca04g00799 547 PANTHER HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 10 237 IPR010635 GO:0008146|GO:0016021
Cca04g00799 547 PANTHER BNAANNG15430D PROTEIN 10 237 - -
Cca04g00799 547 MobiDBLite consensus disorder prediction 370 400 - -
Cca04g00799 547 MobiDBLite consensus disorder prediction 153 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00799 Cca-Chr4 7995641 8005058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00799 283 540 C2C2-Gata Transcription Factor Family AT1G08010 35.517 3.10e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca04g00799 GATA 1.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00799 K22218 - gmx:100810026 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00799 04 7995641 8005058 Cca04g00799 04 7995641 8005058 ECH