Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00798 ATGAAGGAAGCTGAGAAGCTATTGGATCCCCAGCTATGGCACGCCTGCGCCGGTGGCATCATTCAGATGCCGCAACTCAACTCCAAAGTCTTCTACTTTCCGCAGGGTCACGCCGAGCACGCCCACACCACCCTCGATCTTAAGGTTCCGCCGCTCATTCCGTGCACCGTCGCCGCCGTCAAGTTCATGGCCGACCCCGAAACCGACGAGGTCTTCGCCAAGCTCAGCCTCCTCCCCAACTCCGACCTCGCCCGAGACTCCGGCGCCGCTGACTCCGCGCCGGAGGCGGCGGAGAAGCCGGCGTCGTTCGCGAAGACTCTGACGCAGTCCGACGCGAACAACGGCGGGGGGTTCTCGGTGCCGCGGTACTGCGCGGAGACGATTTTCCCGCGGCTGGACTACACGGCGGAGCCGCCGCCGCCGGTGCAGACGGTGGTGGCGAAGGACGTGCACGGCGAGATGTGGAAGTTCCGGCACATTTACCGAGGGACGCCGCGTCGGCACCTTTTGACGACCGGTTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCTGGGGATTCCGTTGTGTTTCTGAGGGCCGAAAATGGTGAGCTGTGCGTTGGGATTCGGAGGGCGAAGAAGGGAATTGGTGGGTCTGAGGCTTGTTCATCTGTGTGGAGTTCTGCTTCTGGGTCTGGGAATTGTGGAATTGGGCCTTATGGGCCTTTCTCTTTTTTCTTGAGGGAGGAGAACAAGCATTTGAGGAATGGTGGTGGGAGGGTTAGGGTGAGTCCTGAGGCTGTGGTTGAAGCTTCGACTCTTGCTGCGAGTAATAAGCCCTTTGAGGTTGTGTATTACCCTAGAGCTAGCACTCCTGAGTTTTGCATTAAGGCTTCTTCTGTCAGGGCTGCTATGAGGATTCAGTGGTCTTCTGGGATGAGGTTCAAGATGGCCTTCGAAACTGAGGACTCTTCCCGGATAAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATCCGCTGGCCTAATTCCCCTTGGAGGCTTCTTCAGGTCACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCAAACATGCCAGTCATCAATTTCACACCCTTCTCTCCACCAAGGAAGAAGCTGCGGTTTCCACAGCACCCGGACTTCCCCCTTGATGTTCAGTTTCCGATACCAGCGTTTTCAGGGAACCACCTTGGGCCTAACAGCCCCTTTTCGGATAATGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTCTAACAGATTTCCACCTAAACAATAAACTGCAGCTGGGGTTGCTTCCAACTAATATCCAGCAACTTGAACTTTATAGTGGAATTTCAAATGGTAACATAGCCAACCATGATAAGAGCAAAGAAAACTTATCATGCTTGCTCACCATGGGGAAATCTAGCAAGAGTTTGGAGAAATCTGATGATGTTGTTAAGAAACACCAGTTTTTGCTTTTTGGTCAGCCAATTCTCACGGAGCAACAAATTTCTAGCGAGGTGTTGTCTCACAGAAAAAATTCACTAGATGATGATAAGGACAAAGAGAAGTGCGTTTTGGATGACTCCCAATCTGCACTCTCACAACAGTTTTCACCAGGAAAAGCTTCTGCTGCTGAGTTTTCTTGGCACCTTGGCTTGGACACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACCCTAGACTTATCACATCTTGGTTCTTATGAAGAGCTGTATAGGAGACTAGCCAACATGTTTGGCATAGAAAGATCTGAGATTTTAAACCATGTTCTCTACCGTGATGCAACAGGTGCTGTTAAGCAAACTGGAGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTAACAGATTCAGGCAACAAGAACATTAAAAGGGTCTGGATCACTGGAACTAGGAATGGTGAACATGGGCTGGATGCATCAAATAAAACAGGCCCGCTGAGCATTTATGCTTAA 2052 0.5078 MKEAEKLLDPQLWHACAGGIIQMPQLNSKVFYFPQGHAEHAHTTLDLKVPPLIPCTVAAVKFMADPETDEVFAKLSLLPNSDLARDSGAADSAPEAAEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPPPVQTVVAKDVHGEMWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGGSEACSSVWSSASGSGNCGIGPYGPFSFFLREENKHLRNGGGRVRVSPEAVVEASTLAASNKPFEVVYYPRASTPEFCIKASSVRAAMRIQWSSGMRFKMAFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVINFTPFSPPRKKLRFPQHPDFPLDVQFPIPAFSGNHLGPNSPFSDNAPASIQGARHAQFGISLTDFHLNNKLQLGLLPTNIQQLELYSGISNGNIANHDKSKENLSCLLTMGKSSKSLEKSDDVVKKHQFLLFGQPILTEQQISSEVLSHRKNSLDDDKDKEKCVLDDSQSALSQQFSPGKASAAEFSWHLGLDTGHCKVFLESEDVGRTLDLSHLGSYEELYRRLANMFGIERSEILNHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILTDSGNKNIKRVWITGTRNGEHGLDASNKTGPLSIYA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00798 683 Pfam B3 DNA binding domain 103 206 IPR003340 GO:0003677
Cca04g00798 683 Gene3D - 101 207 IPR015300 -
Cca04g00798 683 CDD B3_DNA 102 205 IPR003340 GO:0003677
Cca04g00798 683 Gene3D - 302 375 - -
Cca04g00798 683 PANTHER AUXIN RESPONSE FACTOR 2 660 - -
Cca04g00798 683 ProSiteProfiles PB1 domain profile. 571 663 IPR000270 GO:0005515
Cca04g00798 683 SMART B3_2 103 207 IPR003340 GO:0003677
Cca04g00798 683 ProSiteProfiles B3 DNA-binding domain profile. 103 207 IPR003340 GO:0003677
Cca04g00798 683 Pfam Auxin response factor 265 348 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca04g00798 683 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 660 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca04g00798 683 SUPERFAMILY DNA-binding pseudobarrel domain 100 207 IPR015300 -
Cca04g00798 683 Gene3D - 570 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00798 Cca-Chr4 7953764 7957517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00798 4 655 B3 DNA Binding Superfamily AT4G30080 57.437 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca04g00798 B3 3.9e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00798 - - gmx:100814686 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00798 04 7953764 7957517 Cca04g00798 04 7953764 7957517 ECH
Cca10g00522 10 5513342 5516518 Cca04g00798 04 7953764 7957517 ECH
Cca02g00830 02 23157769 23161881 Cca04g00798 04 7953764 7957517 ECH
Cca03g02374 03 44732480 44736520 Cca04g00798 04 7953764 7957517 ECH
Cca10g00522 10 5513342 5516518 Cca04g00798 04 7953764 7957517 PCT