Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00794 ATGGCCATGGCTGTGGCTCAACACAGAGAGAGTAGCAGCAGTGGGAGCATTGACAAGCATCTAGATTCTGGCAAGTATGTGAGGTACACTGCTGAGCAAGTTGAGGCTCTTGAAAGGGTCTATGCTGAGTGCCCTAAGCCTAGTTCTTTGAGGAGGCAGCAATTGATCAGAGAGTGCCCCATTCTCTCCAACATCGAGCCTAAGCAAATCAAGGTTTGGTTCCAGAACCGCAGGTGCAGGGAGAAGCAGAGAAAAGAGGCTTCACGGCTTCAGACTGTGAACCGCAAACTCACGGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTGTGTGAAAATGGTTACATGAGGCAGCAATTGCATACTACACCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACTACTCCTCAGCAGACCATGAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCGGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTAGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTTCGGGACTGTCGGAGCCTAGAAGTTTTCACTATGTTTCCTGCTGGAAATGGGGGAACCATTGAACTTGTTTACACACAGACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATACACAACAAGTTTGGAAAATGGCAGTCTAGTGGTTTGTGAGAGGTCCCTTTCTGGTTCTGGCTCGGGCCCTAATCCAGCTGCTGCTGCTCAATTTGTAAGGGCTGAAACGCTCCCTAGTGGCTACTTGATTCGACCATGTGAGGGCGGAGGGTCAATTATTCACATAGTAGACCACCTAAATCTTGAGGCATGGAGTGTGCCTGAAGTGTTGCGGCCACTTTATGAATCATCAAAGGTGATAGCTCAGAAAATGACAATTGCGGCACTTCGCTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAAGTGGTTTATGGATTGGGTAGGCAGCCTGCTGTTCTGCGAACTTTCAGCCAAAGATTAAGCAGAGGCTTCAATGATGCTGTAAATGGATTCAATGATGATGGGTGGACTGTACTGAATTGTGATGGTGCTGAGGATGTAATTATTGCCGTTAATTCAACCAAGAATTTGAGTGGCACTTCTAATCCAGCGAGTTCCCTTACGTTCCTCGGAGGAATTCTCTGTGCAAAAGCTTCTATGCTTCTTCAAAATGTCCCTCCTGCAGTTTTGGTTCGTTTTCTGAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCTTATGCTGCTGCATCATTGAAAGCTGGCACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAGTCAAATAATCATGCCTCTTGGTCATACCATTGAACATGAAGAGATGCTTGAAGTTATTAGACTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATTTGTAGTGGGATTGATGAGCATGCTGTGGGTGCTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCGGATGATGCTCCATTGGTTCCTTCTGGTTTCCGCATCATCCCACTGGATTCAAAACCAGGTGATAAAAAGGATACAGTGGCTACAAATCGGACCCTGGATTTGACATCTGGTTTTGAAGTGAGCCCAGCAACAACTCAAGGTGCAGACGCGTCAAGTCACAACACTCGATCAGTGTTGACTATTGCTTTCCAGTTCCCATTTGACAGCAGTTTGCAAGATAATGTTGCAGTCATGGCACGTCAATACGTCCGTAGTGTGATTTCCTCTGTGCAGAGGGTTGCCATGGCTATATCTCCATCTGGTATAAACCCAGCTGTCGGAGCAAAACTTTCTCCTGGTTCTCCAGAGGCTGTAACGCTCGCTCACTGGATCTGCCAAAGCTACAGTTACTATTTGGGGTCCGACTTGCTGAGATCAGATTCCCTTGTTGGTGACATGATGCTGAAGCATCTGTGGCATCATCAGGATGCCATTCTATGCTGTTCACTGAAGTCGTTGCCAGTGTTCATATTTGCAAATCAAGCAGGCCTAGACATGTTGGAAACAACTCTAGTGGCTCTACAAGACATCACATTGGATAAAATATTTGATGAGTCTGGACGCAAGGCATTGTGTTCAGACTTTGCCAAGTTAATGGAACAGGGGTTTGCTTATCTGCCAGCTGGAATCTGCATGTCCACCATGGGGAGGCATGTTTCATATGACCAAGCCATTGCATGGAAAGTGCTTACTGGAGAAGATAACAATGTTCATTGCTTGGCTTTCTCTTTCATAAATTGGTCTTTTGTATGA 2526 0.4656 MAMAVAQHRESSSSGSIDKHLDSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQQLHTTPAATTDASCDSVVTTPQQTMRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGSGPNPAAAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVIAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWTVLNCDGAEDVIIAVNSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYAAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDEHAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDTVATNRTLDLTSGFEVSPATTQGADASSHNTRSVLTIAFQFPFDSSLQDNVAVMARQYVRSVISSVQRVAMAISPSGINPAVGAKLSPGSPEAVTLAHWICQSYSYYLGSDLLRSDSLVGDMMLKHLWHHQDAILCCSLKSLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCSDFAKLMEQGFAYLPAGICMSTMGRHVSYDQAIAWKVLTGEDNNVHCLAFSFINWSFV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00794 841 Pfam MEKHLA domain 697 840 IPR013978 -
Cca04g00794 841 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Cca04g00794 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 841 - -
Cca04g00794 841 SMART HOX_1 22 88 IPR001356 GO:0003677
Cca04g00794 841 CDD START_ArGLABRA2_like 158 374 - -
Cca04g00794 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 841 IPR044830 GO:0003700
Cca04g00794 841 SMART START_1 163 373 IPR002913 GO:0008289
Cca04g00794 841 Gene3D - 198 380 IPR023393 -
Cca04g00794 841 Coils Coil 94 121 - -
Cca04g00794 841 Gene3D - 18 91 - -
Cca04g00794 841 CDD bZIP 77 116 - -
Cca04g00794 841 CDD homeodomain 25 85 IPR001356 GO:0003677
Cca04g00794 841 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Cca04g00794 841 SUPERFAMILY Homeodomain-like 24 87 IPR009057 -
Cca04g00794 841 Pfam START domain 164 371 IPR002913 GO:0008289
Cca04g00794 841 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cca04g00794 841 SUPERFAMILY Bet v1-like 163 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00794 Cca-Chr4 7900150 7906802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00794 1 841 Homeobox Transcription Factor Family AT5G60690 82.568 0.0 1451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca04g00794 START 4.2e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00794 K09338 - gmx:100804870 1625.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00794 04 7900150 7906802 Cca04g00794 04 7900150 7906802 ECH