Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00788 ATGGCTAAAGATGTTGAGGTTCAAGAGCAAGGAGAATACTCCTCCAAAGACTATCAAGACCCTCCTCCGGCACCCTTGATCGACCCTGAGGAGCTCACAAAGTGGTCCTTCTGGCGAGCCCTCATTGCTGAGTTCATAGCAACCCTTCTCTTCCTTTATATCACTGTTCTCACCATTATTGGCTACAAAAGCCAAACTGATCCTAGCAAAAAGGGCACCGAGTGTGATGGGGTTGGCATTTTGGGCATTGCTTGGTCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCTGGAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTCCTAGGACGGAAGGTGTCGCTGATAAGGGCGTTGTTGTACATGGTAGCACAGTGTGCCGGTGCTATCTGTGGCGCTGGACTTGCCAAGGGCTTCCAAACAGCATACTACGACAGATATGGAGGTGGTGCCAACTCTGTTGCAGATGGCTACAACAAGGGCACTGCTTTGGGTGCTGAGATTATTGGTACCTTCGTTCTTGTTTACACTGTCTTCTCTGCCACTGACCCCAAGAGGAACGCTAGGGACTCCCATGTTCCCGTGCTAGCACCACTACCCATTGGATTTGCTGTGTTCATGGTTCACTTAGCTACAATCCCAATTACTGGTACTGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGACCAGTGGATTTTCTGGGTTGGACCCATTGTTGGAGCAGCAGTGGCTGCATTCTACCACCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCATTCAGGAGCAACGCTTAA 858 0.4965 MAKDVEVQEQGEYSSKDYQDPPPAPLIDPEELTKWSFWRALIAEFIATLLFLYITVLTIIGYKSQTDPSKKGTECDGVGILGIAWSFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCAGAICGAGLAKGFQTAYYDRYGGGANSVADGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNEDKIWDDQWIFWVGPIVGAAVAAFYHQYILRAAAIKALGSFRSNA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00788 285 MobiDBLite consensus disorder prediction 1 24 - -
Cca04g00788 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00788 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00788 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00788 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00788 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00788 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00788 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cca04g00788 285 PANTHER AQUAPORIN PIP2-7 1 285 - -
Cca04g00788 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Cca04g00788 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00788 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00788 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Cca04g00788 285 TIGRFAM MIP: MIP family channel proteins 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00788 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00788 Cca-Chr4 7823730 7826104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00788 1 283 Major Intrinsic Protein MIP AT5G60660 79.505 7.74e-173 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00788 K09872 - gmx:100811119 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00788 04 7823730 7826104 Cca04g00788 04 7823730 7826104 ECH
Cca10g00517 10 5420700 5422776 Cca04g00788 04 7823730 7826104 ECH
Cca03g02372 03 44699760 44701228 Cca04g00788 04 7823730 7826104 ECH
Cca10g00517 10 5420700 5422776 Cca04g00788 04 7823730 7826104 PCT