Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00783 ATGGATCCCAGGAACACATACTGGAAGCCTACACAAGTAGCTTCAAGAAATGATTTTCGCCTCCCAATGACTAGCTCAGCGGATCACCAAGGAATATCCAATGTGGCGCCAGCTGATGCACCACTGCAATTGCTTCCCATTCGTAAAGCAGTTGGTGTTCCTGAGATGGATGAAAACACTAATGCCATGGATGTAAGAATCCATGATTATATCAACAATCTCCGGTTCTCTATATCTCCAACAGCTTTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACACTGCTGTTTGATGTATGCTGTGGGACAGGAACAATTGGCTTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCCGTATGTGATGCACATAGGAATGCTGAGATTAATGGCATAAAAAATGTTAGATTTATATGTGCGAAGGCAGAGGACGTGATGGGATCTCTGTTAATGGAATATCTAAATATGACTAAGGAACAAGTTGATGATCCTAATATCTCTGGAAGTGGCAATGACATTCCTGAGGATAGTGCCTGCCCAGAGCCTGAAAATGGTGAAATGGCATCTCATTGTCCAGAAAATAACAATGCAGAAGTTGGAAGTGAGGTTCAGAAGGGTAGCACCTCTGAACAAGTTGATGAGATCTCTGAACAGGCAGAGGATGTGATGGGATCTGTGTCGAGGGATGATTTAAATGTTGCAAAGGAACTTAGTGATGATCCGAATATCTCTGGGAGTGGCAATAACATTCCTGTGGACAGTACCTGCCCAGAGACTAAAAACAGTGAAATGGCATCTCGTTCAGAAAACAACAATACAGAAGTTGGAAGTGAGGTTCAGAAAAGTAGTACTCCTGAAAATGGGAATACTTCCATGCAACAGTTCAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCTACTGTGATCAAAGCTTTGAGAACTCATCCAGGCTTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAATCATTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCGCAAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCACGGCATAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTTTTGAGAGTTGGCACTTGATTCTTTTCATAATGCAGGCAAGGCAAGTACTCAAACAAAAGAAGCGGGGTCTCTTGAAGATCATACATATAACATATGAATGTTCAAGGACATTAGAGTTGTCTCTGTCATCACTCATCTCTTCTTGCATGCACCAAGCAATAAGTAAGTGCAAAATGAGAACAGAGGAAAAGCCTGTGAGTGAGGAACATGATGCAGGTCCTTGCAGAAGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATGCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCCTCAAGAACAGAAGAGTGTTCTCCAGATTTTGTTGCAATCAAAATGCCAccaacaccaagttccaatcccactcctactccaaAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATGCTCCATCAAATAATTCTCCTGGACCTTCAACATCAAGAAGCAGATCATCCATAAGAAACCTCCTTCCAAAACTGAGCTTCAGGTATCGAACACCAGCAGATACTGAAAAAGCAAATAATGCAGCTCCAGAAGTATCCTCTTCAGGCATTGGAGAAAAGCCTTCAATCTCGAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACCTCATCATTGCCTCTAGATGAAATTAGACAATCTAACACTGAATCTTCTCATGGTGGAAGTGTTGGTGGCCCTCTAAATAAAAGAGAAGCCCAGCAGAAGATAGCTCGCTCTCTTTCAGTACCTGTCAACAACAAAGATAAAAGCCTAAGGAGAATGGATTCATTTTTTCGTGTTGTTCCTTCCACTCCTCGAGTAAGGGAAGGAAATGAATTGTTGGCCTCGCCCACGACAAATGATACTGAAAATGAAGATTCTAATGGTGAAGATATAGCAGAAGAAGAGGCCGTGTGTAGAATCTGTCTGGTTGATTTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTTTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGTGCAAATAGGTCTCAGCTGGATGATGTAAATGGATACAGGGTATGGCAGGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTCTTGGTTGGAAAGATGGGAACTGGTGCAATTGCGATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTCTCCTCTATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCACATATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTGGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGCTCTATTCTTGTGGAGTTTTTTAGATGGAGGAGAAGATTGCAGGCTTCATCAGAGCAGCGACACGGCCCTCCATTGATGCCACAAGCAGCACAAACTCCACGAACTTCAAACACGCCACGTCCAGGTTCAGGTCCTTCCAACCACAGTCAATCTGTGGTGCAAAATGAACAAAACTCAAATCAGAGTTGA 2997 0.4258 MDPRNTYWKPTQVASRNDFRLPMTSSADHQGISNVAPADAPLQLLPIRKAVGVPEMDENTNAMDVRIHDYINNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVCDAHRNAEINGIKNVRFICAKAEDVMGSLLMEYLNMTKEQVDDPNISGSGNDIPEDSACPEPENGEMASHCPENNNAEVGSEVQKGSTSEQVDEISEQAEDVMGSVSRDDLNVAKELSDDPNISGSGNNIPVDSTCPETKNSEMASRSENNNTEVGSEVQKSSTPENGNTSMQQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPESLVANAIELCTPSPAKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLFESWHLILFIMQARQVLKQKKRGLLKIIHITYECSRTLELSLSSLISSCMHQAISKCKMRTEEKPVSEEHDAGPCRRTVSLPVQKVDDAMGITEETTHVPPRKRQNLLLEIPSRTEECSPDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDAPSNNSPGPSTSRSRSSIRNLLPKLSFRYRTPADTEKANNAAPEVSSSGIGEKPSISRSLSLTKIFTPRIKRTSSLPLDEIRQSNTESSHGGSVGGPLNKREAQQKIARSLSVPVNNKDKSLRRMDSFFRVVPSTPRVREGNELLASPTTNDTENEDSNGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGANRSQLDDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRLQASSEQRHGPPLMPQAAQTPRTSNTPRPGSGPSNHSQSVVQNEQNSNQS 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00783 998 MobiDBLite consensus disorder prediction 210 234 - -
Cca04g00783 998 MobiDBLite consensus disorder prediction 717 739 - -
Cca04g00783 998 ProSitePatterns RNA methyltransferase trmA family signature 1. 324 356 IPR030390 -
Cca04g00783 998 MobiDBLite consensus disorder prediction 574 599 - -
Cca04g00783 998 MobiDBLite consensus disorder prediction 182 311 - -
Cca04g00783 998 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 803 IPR013083 -
Cca04g00783 998 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 1 430 IPR010280 GO:0006396|GO:0008173
Cca04g00783 998 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 515 968 - -
Cca04g00783 998 MobiDBLite consensus disorder prediction 654 688 - -
Cca04g00783 998 MobiDBLite consensus disorder prediction 260 311 - -
Cca04g00783 998 MobiDBLite consensus disorder prediction 574 632 - -
Cca04g00783 998 SMART ringv_2 747 796 IPR011016 GO:0008270
Cca04g00783 998 MobiDBLite consensus disorder prediction 965 998 - -
Cca04g00783 998 Pfam Methyltransferase domain 110 168 IPR025714 -
Cca04g00783 998 PANTHER OS02G0165000 PROTEIN 515 968 - -
Cca04g00783 998 MobiDBLite consensus disorder prediction 655 671 - -
Cca04g00783 998 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 428 IPR029063 -
Cca04g00783 998 MobiDBLite consensus disorder prediction 953 998 - -
Cca04g00783 998 ProSiteProfiles Zinc finger RING-CH-type profile. 740 802 IPR011016 GO:0008270
Cca04g00783 998 MobiDBLite consensus disorder prediction 549 568 - -
Cca04g00783 998 Pfam RING-variant domain 748 795 IPR011016 GO:0008270
Cca04g00783 998 MobiDBLite consensus disorder prediction 618 632 - -
Cca04g00783 998 SUPERFAMILY RING/U-box 744 799 - -
Cca04g00783 998 CDD AdoMet_MTases 112 166 - -
Cca04g00783 998 CDD RING_CH-C4HC3_MARCH 748 796 - -
Cca04g00783 998 Gene3D Vaccinia Virus protein VP39 53 429 IPR029063 -
Cca04g00783 998 Pfam tRNA (Uracil-5-)-methyltransferase 313 364 IPR010280 GO:0006396|GO:0008173
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00783 Cca-Chr4 7779445 7794745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00783 734 802 C3H Transcription Factor Family AT2G37950 44.286 6.33e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00783 - - gmx:100815566 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00783 04 7779445 7794745 Cca04g00783 04 7779445 7794745 ECH
Cca10g00511 10 5337386 5340927 Cca04g00783 04 7779445 7794745 PCT