Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00778 ATGGGGTGTTGTTGTTGCTTTGGGTTTTTGAGGACATCGAACCATCGACGTCAAAGGTCTAAGCCTGCCATAAACAATAATATCTCCCAGGAGCCTCTGTTGGATGATGACATTGAAGATGAAGAGGGTGAGCATTTGTataatgatgaggttactgacactagtgtaagtggagatgataatgataatgaGGAGCAAACTCGTCCCAAGCGATCAGAAGAAATTTTGAACTTGAGAGTAGAGAATGGCATGATTTGTAGGCAGTTTCCCGTTAAGGAGACTCACAAAGTTGTTCGCATGGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATACGTGAGTGTAAGATTGGTTCTGGTAGCTACGGGAAAGTGGCTCTTTATCGAAGCTCTGTTGATGGAAAACATTATGCAATTAAGGCCTTTCATAAATCTCATTTACTGAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGACAGATGTACTACGTGAGGTTCTCATAATGAAAATGCTGCAACATCCAAATATAGTCAATCTCATCGAGGTGATTGATGACCCAGAGTCGGATAACTTCTACATGGTACTTGAATATGTTGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCCCACTTGTGGCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGTGATATAGTTTGTGGATTGATGTATCTCCATGCTCATAATATAGTACATGGGGATATTAAACCAGATAATCTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGCATTATAGGTCTGACCTATGGTGGTAAAGCAGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGCGAATACCCTTTTCTTGGAGACACACTTCAAGATACATATGACAGAATAGTCAATAATCCTTTAGTACTCCCCAGTGATATGAATCCACAATTGAAGAGCTTAATAGAAGGCCTACTTTCCAAAGACCCAAGACAAAGGATGACTTTGGATGATGTTGCGGAAGATATCTGGGTTATTGGAGACCATGGGCCAATTTCTGAGTACCTTTGTTGGTGCAAGAGGAAAAGCTTGGGAATGGAAGACAATGAGAGCAATACCTACTAA 1209 0.402 MGCCCCFGFLRTSNHRRQRSKPAINNNISQEPLLDDDIEDEEGEHLYNDEVTDTSVSGDDNDNEEQTRPKRSEEILNLRVENGMICRQFPVKETHKVVRMEDENGNKMINEYIRECKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMLQHPNIVNLIEVIDDPESDNFYMVLEYVEGKWVCEGSGPTCGLGEETARRYLRDIVCGLMYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDDNDELRRSPGTPVFTAPECIIGLTYGGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVNNPLVLPSDMNPQLKSLIEGLLSKDPRQRMTLDDVAEDIWVIGDHGPISEYLCWCKRKSLGMEDNESNTY 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00778 402 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Cca04g00778 402 SUPERFAMILY Protein kinase-like (PK-like) 101 383 IPR011009 -
Cca04g00778 402 MobiDBLite consensus disorder prediction 48 70 - -
Cca04g00778 402 Gene3D Phosphorylase Kinase; domain 1 106 208 - -
Cca04g00778 402 Pfam Protein kinase domain 114 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00778 402 ProSiteProfiles Protein kinase domain profile. 112 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00778 402 CDD STKc_LKB1_CaMKK 118 373 - -
Cca04g00778 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Cca04g00778 402 Gene3D Transferase(Phosphotransferase) domain 1 211 382 - -
Cca04g00778 402 SMART serkin_6 112 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00778 402 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 401 - -
Cca04g00778 402 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 1 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00778 Cca-Chr4 7738700 7742653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00778 118 380 CBL-interacting serine-threonine protein kinases AT5G35410 33.460 4.73e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Cca04g00778 Pkinase 4.7e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00778 K00908 - gmx:100789178 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00778 04 7738700 7742653 Cca04g00778 04 7738700 7742653 ECH