LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g00762	ATGGGGAAGAAGCAGAAAATCGTTCTTCCACCGGACCTTCCGCCGGAGATCCCTGACGACGACATTGAAGTTTCCGACGATGACCTCCAATTCGTCAAGGAGAACCGCGGCTATGCCTCCTTACTCTCCACTTTGGATACCCAATCAATCACCAAGCATGTTACACGGGTTGCTGATGCCAAAGATGACGCATTGGAGAAAATATATGAGAAACGCTTGCAAAAGAATGCTCTCAAGAAAGAAAAAGAAGAAACTGGTTTGCAGGTTGATCGTGTAGATGCTCTTCCAATCAAAACATTGGATGGAAAAGTCTATTACCGGACAGCTACTAAGACTGTAACGGAAAATGATCCAAGTGAAGAGGGAGCTGGAGAGGATGTCGATGTAGACAAAGGTCTAGTGAAGCTAACAAAGGCTGAAAAGAGAGCCAAACTTAAGAAGATGAAAAAAGAAGCAAAAAAACAAGGAAAAGAGGTGGCTGAAGCAGAAGTGGAAGAAACACCGCAAGCAGCAGTACTGGCTGAGGTAAAAGAAGATCTTACAGCCGAGGAGGCATTTGAAAGTAAGAAGCACAAACTTGCAGAATTGGGGAATGCCTTGCTTACAGATCCAGAGTCCAATATTAAATTTCTGAAGGAGATGGTACAGATATCTAAAGATAATGATCATACCATTGTTAAACTTGGACTTCTATCCCTCTTGGCTGTTTTCAAAGATATTGTCCCTGGCTATCGGATCAGGCTTCCTACTGAAAAGGAACTAGAGATGAAGGTTTCAAAGACAGTTAGAAAGACGCGTTATTATGAGTCAACTCTTCTTTCATCATACAAGGCATACCTGCAAAGGCTGGTAGCCTTAGAAAAGAAGCCTTTATTTCAGCTTGTGGCAGTTCGTTGTATTTGTTCTTTGCTTGAGGCAAATCCCCATTTCAATTTTCGCGAAAGTTTGTTGGATGCTACTGTTAGAAACATAAGCTCTACTAATGAGGCTATAAGGAAACTTTGTTGTTCCACAATTAAATCACTCTTTACTAATGAGGGTAAACATGGGGGTGAAGTTACCGTGGATGCTGTTCGATTGATTGCCGATCATGTTAAAGCTCATAATTGCCAAATGCACCCAGATTCCATTGATGTTTTCTTGTCCCTTTCATTTGATGAAGATCTTGTTAAGTCTGGAAACATAGAAGAGGATCAGAAGTTAAAAAACAAGAAAAGTAACAAAAGGAAAAGCTCGGAGGCATCAGATCAGTCGGTGGAGAATGATAGAAAGAAAAGTAGGAAAGAATTGATTTCTAAGACAAGAGAGGAGGTTGAAGCTGATTACAAGGCTGCATCCTTTGCTCCGGATGTTATGGAGAGGAGACAGATGCAAACTGAAACACTCTCTGCTGTCTTTGAGACATATTTTCGCATTTTGAAGCATACAATGCAGTCCATATGTGCCAGGCCTGAAGCAAATATTGGTGCATTATCTACACCAGTGGAACCCCTCCCTTTGCTTGATCCATGTCTGAAAGGACTGGCAAAATTTTCACATCTGATTGACCTGGATTTCATGGGTGATTTAATGAACCATCTGAAAGTACTCACTTCTGGAAGTAGCAACACAGGCAACACTTCTGACAAGTCTTCTAAATGCTTGACTGTATCGGAGCGTCTCCAATGTTGCCTTGTTGCTTTTAAAGTGATGAGGAACAATCTCGATGCCTTGAATGTTGATTTACAGGACTTCTTTCTCCATCTTTACAATATTGTACTTGAGTACAGGCCAGGAAGAGATCAAGGAGAGTTGTTGGCAGAAGCTTTCAAGATAATGTTGTGTGATGATAGGCAACATGACATGCAAAAGACTGCTGCATTTGTAAAACGATTAGCAACGTTTTCACTGTGTGTTGGATCAGCAGATGCCATGGCTGCCTTGGTCACAGTAAAGCATCTCCTTCTGAAGAATGTTAAGTGCAGAAATTTGTTGGAAAATGACATTGGAGGGGGCTCTGTTTCTGGCACAATTCCTAAATATCTACCATATTCCACAGACCCCAATTTAAGCGGTGCCCTTGCCTCAGTACTTTGGGAACTCAATCTTTTGTCCAAGCATTATCATCCAGCTATATCAACATTGGCCTCTGGCATTTCAAGCATGAGCACTGCAAATAACCAGCTCATTTTATCCAAGTCCTCTCCTCAACAAGCTTTCAAGGAAATGTCTCTGGACCAGGAATTATGTTTCACACAAAGTAGCAGTATAAAGGTAAATAACAAGAAGAGACGAAAAAATGGCTCTGCTACATCACCTTCCATTGGTTCTACAAAAGTTATTAGTTCATTCGACGATGATGAGTTGCGAAGCAAACTTAATTCCCATTTCACGATTCTTCAAGACATCAAGGAGAATGAAAGGTTGAGGAGGGAGTTGGATAGGACTGCACTTTCACTGCAGCTATATGAACAATATAAGAAACAAAAGAAACCATCTAAACGAAAATCGGTCTTGCCCAGACCGCCTTTCAAACTTCGGTCTGTCCGGCCGGCCTAA	2538	0.4153	MGKKQKIVLPPDLPPEIPDDDIEVSDDDLQFVKENRGYASLLSTLDTQSITKHVTRVADAKDDALEKIYEKRLQKNALKKEKEETGLQVDRVDALPIKTLDGKVYYRTATKTVTENDPSEEGAGEDVDVDKGLVKLTKAEKRAKLKKMKKEAKKQGKEVAEAEVEETPQAAVLAEVKEDLTAEEAFESKKHKLAELGNALLTDPESNIKFLKEMVQISKDNDHTIVKLGLLSLLAVFKDIVPGYRIRLPTEKELEMKVSKTVRKTRYYESTLLSSYKAYLQRLVALEKKPLFQLVAVRCICSLLEANPHFNFRESLLDATVRNISSTNEAIRKLCCSTIKSLFTNEGKHGGEVTVDAVRLIADHVKAHNCQMHPDSIDVFLSLSFDEDLVKSGNIEEDQKLKNKKSNKRKSSEASDQSVENDRKKSRKELISKTREEVEADYKAASFAPDVMERRQMQTETLSAVFETYFRILKHTMQSICARPEANIGALSTPVEPLPLLDPCLKGLAKFSHLIDLDFMGDLMNHLKVLTSGSSNTGNTSDKSSKCLTVSERLQCCLVAFKVMRNNLDALNVDLQDFFLHLYNIVLEYRPGRDQGELLAEAFKIMLCDDRQHDMQKTAAFVKRLATFSLCVGSADAMAALVTVKHLLLKNVKCRNLLENDIGGGSVSGTIPKYLPYSTDPNLSGALASVLWELNLLSKHYHPAISTLASGISSMSTANNQLILSKSSPQQAFKEMSLDQELCFTQSSSIKVNNKKRRKNGSATSPSIGSTKVISSFDDDELRSKLNSHFTILQDIKENERLRRELDRTALSLQLYEQYKKQKKPSKRKSVLPRPPFKLRSVRPA	845

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g00762	845	SUPERFAMILY	ARM repeat	204	390	IPR016024	-
	Cca04g00762	845	PANTHER	NUCLEOLAR COMPLEX PROTEIN 3	2	786	IPR016903	-
	Cca04g00762	845	MobiDBLite	consensus disorder prediction	818	845	-	-
	Cca04g00762	845	PIRSF	Noc3	2	810	IPR016903	-
	Cca04g00762	845	Coils	Coil	138	165	-	-
	Cca04g00762	845	Pfam	CBF/Mak21 family	554	709	IPR005612	-
	Cca04g00762	845	Pfam	Nucleolar complex-associated protein	189	279	IPR011501	-
	Cca04g00762	845	MobiDBLite	consensus disorder prediction	1	23	-	-
	Cca04g00762	845	MobiDBLite	consensus disorder prediction	396	432	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca04g00762	1	806	Core DNA Replication Machinery Family	AT1G79150	59.002	0.0	915

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g00762	K14834		-	gmx:100776136	1322.76

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