Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00762 ATGGGGAAGAAGCAGAAAATCGTTCTTCCACCGGACCTTCCGCCGGAGATCCCTGACGACGACATTGAAGTTTCCGACGATGACCTCCAATTCGTCAAGGAGAACCGCGGCTATGCCTCCTTACTCTCCACTTTGGATACCCAATCAATCACCAAGCATGTTACACGGGTTGCTGATGCCAAAGATGACGCATTGGAGAAAATATATGAGAAACGCTTGCAAAAGAATGCTCTCAAGAAAGAAAAAGAAGAAACTGGTTTGCAGGTTGATCGTGTAGATGCTCTTCCAATCAAAACATTGGATGGAAAAGTCTATTACCGGACAGCTACTAAGACTGTAACGGAAAATGATCCAAGTGAAGAGGGAGCTGGAGAGGATGTCGATGTAGACAAAGGTCTAGTGAAGCTAACAAAGGCTGAAAAGAGAGCCAAACTTAAGAAGATGAAAAAAGAAGCAAAAAAACAAGGAAAAGAGGTGGCTGAAGCAGAAGTGGAAGAAACACCGCAAGCAGCAGTACTGGCTGAGGTAAAAGAAGATCTTACAGCCGAGGAGGCATTTGAAAGTAAGAAGCACAAACTTGCAGAATTGGGGAATGCCTTGCTTACAGATCCAGAGTCCAATATTAAATTTCTGAAGGAGATGGTACAGATATCTAAAGATAATGATCATACCATTGTTAAACTTGGACTTCTATCCCTCTTGGCTGTTTTCAAAGATATTGTCCCTGGCTATCGGATCAGGCTTCCTACTGAAAAGGAACTAGAGATGAAGGTTTCAAAGACAGTTAGAAAGACGCGTTATTATGAGTCAACTCTTCTTTCATCATACAAGGCATACCTGCAAAGGCTGGTAGCCTTAGAAAAGAAGCCTTTATTTCAGCTTGTGGCAGTTCGTTGTATTTGTTCTTTGCTTGAGGCAAATCCCCATTTCAATTTTCGCGAAAGTTTGTTGGATGCTACTGTTAGAAACATAAGCTCTACTAATGAGGCTATAAGGAAACTTTGTTGTTCCACAATTAAATCACTCTTTACTAATGAGGGTAAACATGGGGGTGAAGTTACCGTGGATGCTGTTCGATTGATTGCCGATCATGTTAAAGCTCATAATTGCCAAATGCACCCAGATTCCATTGATGTTTTCTTGTCCCTTTCATTTGATGAAGATCTTGTTAAGTCTGGAAACATAGAAGAGGATCAGAAGTTAAAAAACAAGAAAAGTAACAAAAGGAAAAGCTCGGAGGCATCAGATCAGTCGGTGGAGAATGATAGAAAGAAAAGTAGGAAAGAATTGATTTCTAAGACAAGAGAGGAGGTTGAAGCTGATTACAAGGCTGCATCCTTTGCTCCGGATGTTATGGAGAGGAGACAGATGCAAACTGAAACACTCTCTGCTGTCTTTGAGACATATTTTCGCATTTTGAAGCATACAATGCAGTCCATATGTGCCAGGCCTGAAGCAAATATTGGTGCATTATCTACACCAGTGGAACCCCTCCCTTTGCTTGATCCATGTCTGAAAGGACTGGCAAAATTTTCACATCTGATTGACCTGGATTTCATGGGTGATTTAATGAACCATCTGAAAGTACTCACTTCTGGAAGTAGCAACACAGGCAACACTTCTGACAAGTCTTCTAAATGCTTGACTGTATCGGAGCGTCTCCAATGTTGCCTTGTTGCTTTTAAAGTGATGAGGAACAATCTCGATGCCTTGAATGTTGATTTACAGGACTTCTTTCTCCATCTTTACAATATTGTACTTGAGTACAGGCCAGGAAGAGATCAAGGAGAGTTGTTGGCAGAAGCTTTCAAGATAATGTTGTGTGATGATAGGCAACATGACATGCAAAAGACTGCTGCATTTGTAAAACGATTAGCAACGTTTTCACTGTGTGTTGGATCAGCAGATGCCATGGCTGCCTTGGTCACAGTAAAGCATCTCCTTCTGAAGAATGTTAAGTGCAGAAATTTGTTGGAAAATGACATTGGAGGGGGCTCTGTTTCTGGCACAATTCCTAAATATCTACCATATTCCACAGACCCCAATTTAAGCGGTGCCCTTGCCTCAGTACTTTGGGAACTCAATCTTTTGTCCAAGCATTATCATCCAGCTATATCAACATTGGCCTCTGGCATTTCAAGCATGAGCACTGCAAATAACCAGCTCATTTTATCCAAGTCCTCTCCTCAACAAGCTTTCAAGGAAATGTCTCTGGACCAGGAATTATGTTTCACACAAAGTAGCAGTATAAAGGTAAATAACAAGAAGAGACGAAAAAATGGCTCTGCTACATCACCTTCCATTGGTTCTACAAAAGTTATTAGTTCATTCGACGATGATGAGTTGCGAAGCAAACTTAATTCCCATTTCACGATTCTTCAAGACATCAAGGAGAATGAAAGGTTGAGGAGGGAGTTGGATAGGACTGCACTTTCACTGCAGCTATATGAACAATATAAGAAACAAAAGAAACCATCTAAACGAAAATCGGTCTTGCCCAGACCGCCTTTCAAACTTCGGTCTGTCCGGCCGGCCTAA 2538 0.4153 MGKKQKIVLPPDLPPEIPDDDIEVSDDDLQFVKENRGYASLLSTLDTQSITKHVTRVADAKDDALEKIYEKRLQKNALKKEKEETGLQVDRVDALPIKTLDGKVYYRTATKTVTENDPSEEGAGEDVDVDKGLVKLTKAEKRAKLKKMKKEAKKQGKEVAEAEVEETPQAAVLAEVKEDLTAEEAFESKKHKLAELGNALLTDPESNIKFLKEMVQISKDNDHTIVKLGLLSLLAVFKDIVPGYRIRLPTEKELEMKVSKTVRKTRYYESTLLSSYKAYLQRLVALEKKPLFQLVAVRCICSLLEANPHFNFRESLLDATVRNISSTNEAIRKLCCSTIKSLFTNEGKHGGEVTVDAVRLIADHVKAHNCQMHPDSIDVFLSLSFDEDLVKSGNIEEDQKLKNKKSNKRKSSEASDQSVENDRKKSRKELISKTREEVEADYKAASFAPDVMERRQMQTETLSAVFETYFRILKHTMQSICARPEANIGALSTPVEPLPLLDPCLKGLAKFSHLIDLDFMGDLMNHLKVLTSGSSNTGNTSDKSSKCLTVSERLQCCLVAFKVMRNNLDALNVDLQDFFLHLYNIVLEYRPGRDQGELLAEAFKIMLCDDRQHDMQKTAAFVKRLATFSLCVGSADAMAALVTVKHLLLKNVKCRNLLENDIGGGSVSGTIPKYLPYSTDPNLSGALASVLWELNLLSKHYHPAISTLASGISSMSTANNQLILSKSSPQQAFKEMSLDQELCFTQSSSIKVNNKKRRKNGSATSPSIGSTKVISSFDDDELRSKLNSHFTILQDIKENERLRRELDRTALSLQLYEQYKKQKKPSKRKSVLPRPPFKLRSVRPA 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00762 845 SUPERFAMILY ARM repeat 204 390 IPR016024 -
Cca04g00762 845 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 2 786 IPR016903 -
Cca04g00762 845 MobiDBLite consensus disorder prediction 818 845 - -
Cca04g00762 845 PIRSF Noc3 2 810 IPR016903 -
Cca04g00762 845 Coils Coil 138 165 - -
Cca04g00762 845 Pfam CBF/Mak21 family 554 709 IPR005612 -
Cca04g00762 845 Pfam Nucleolar complex-associated protein 189 279 IPR011501 -
Cca04g00762 845 MobiDBLite consensus disorder prediction 1 23 - -
Cca04g00762 845 MobiDBLite consensus disorder prediction 396 432 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00762 1 806 Core DNA Replication Machinery Family AT1G79150 59.002 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00762 K14834 - gmx:100776136 1322.76