Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00756 atgtctgaagaaaccttttctgTTCCTCCCAACACCATCTTGCTTCATGCTCAACCCCCCACCTCAAACCCTAATCATCCAAACCCTAATTCAAATCCACCTAAGAAAAAGAGAAGTCTACCCGGAACACCAGATCCAGATTCTGAAGTGGTGGCTCTTTCACCAAAGTCCCTCATGGCCACCAACCGCTTCATATGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAACTTGCAGCTGCATAGACGTGGCCACAACCTTCCGTGGAAGCTGAAGCAGAGAACGAACAAAGATCAAGTGAGGAAGAAGGTGTACGTGTGCCCTGAGAAGAGTTGTGTGCACCATGACCCTTCCAGAGCCTTGGGAGACTTGACAGGGATAAAGAAGCACTATAGCCGAAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGTGATGCTTTGGCTGAAGAAAGTGTGAGGATAACTACAACTACAGTTCCAGCAGCTTTAAGTAATATTCATCATTTGACCAATGCTCAAGGTTCGAGGATCCCTCAGATTTTCCCCGGCTTTCACTCAGAATTCGGTGGCTCAGGGTCAGAACCATTATATGCTGACGCAAATCATCATCAACAAAAGCTAAGGCTACCACTGTGGCTAGACCATGCCAACAATAATATTAATCCTCATCACCCTCTTAACTTCCCAACCAAACCAAGTGCTTTCACTTCAGGAACAAACTCTGTGCCCGATCTGGTGCAAACAATGGACATGTTTGGGCCACAGTTTGCGAATTACCGTTACCCCGAAGCATCATTTGCAAGTGCCAACCTGTCTGTGCTACCTCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGACTTGTCGCATAGTGCAAGCTCTTTGTACTTGAGCACTCAGAATCAGAACCCACCTCATCACATGTCAGCCACCTCACTGTTGCACAAAGCGGTTCAAATGGGATCTACGAGGATGAACGGCAACAACGTGTTCGGCTCCATGAGCAACAACAACAACGTGGTTGTTGAGGTTCACAAACTGAACGAGTTGATGAATGTGGAAGGGTGCACCAACCTtggaggtggtggtggtggtTACATATTAAATGACTCAAGCAACTCGTTTGTGGTTGTGAATAGCAGCAAGGCTTTGGAGCACATGGTGATTCCGGTGGATGAAGAGACAACAGCATCAATTGTGGGCAAGCAATTGCACTCTAAAAACAAAACCCAACTTGGTTTAACCAGAGACTTCTTGGGCGTTGGAGAAAATGTTGACTCAATAAGAAGACCCTTCTTGCAGCAAGACCTTGTTGAATTTAATACAATGGGGTCACACTCAGCCTCATCAGCCATGAACCTGCATAGCCAGTACGGTGGACACTACTGCTAG 1533 0.4521 MSEETFSVPPNTILLHAQPPTSNPNHPNPNSNPPKKKRSLPGTPDPDSEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRITTTTVPAALSNIHHLTNAQGSRIPQIFPGFHSEFGGSGSEPLYADANHHQQKLRLPLWLDHANNNINPHHPLNFPTKPSAFTSGTNSVPDLVQTMDMFGPQFANYRYPEASFASANLSVLPPHGLKQEQEENKGDLSHSASSLYLSTQNQNPPHHMSATSLLHKAVQMGSTRMNGNNVFGSMSNNNNVVVEVHKLNELMNVEGCTNLGGGGGGYILNDSSNSFVVVNSSKALEHMVIPVDEETTASIVGKQLHSKNKTQLGLTRDFLGVGENVDSIRRPFLQQDLVEFNTMGSHSASSAMNLHSQYGGHYC 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00756 510 SMART c2h2final6 106 136 IPR013087 -
Cca04g00756 510 SMART c2h2final6 64 86 IPR013087 -
Cca04g00756 510 SMART c2h2final6 141 161 IPR013087 -
Cca04g00756 510 Gene3D Classic Zinc Finger 43 116 - -
Cca04g00756 510 Gene3D Classic Zinc Finger 117 198 - -
Cca04g00756 510 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 24 476 - -
Cca04g00756 510 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 476 - -
Cca04g00756 510 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Cca04g00756 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Cca04g00756 510 MobiDBLite consensus disorder prediction 1 21 - -
Cca04g00756 510 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Cca04g00756 510 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Cca04g00756 510 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00756 Cca-Chr4 7599492 7602123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00756 21 198 IDZ Gene Family AT3G50700 84.831 4.65e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g00756 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00756 K25870 - gmx:100781896 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00756 04 7599492 7602123 Cca04g00756 04 7599492 7602123 ECH
Cca10g00503 10 5247483 5249118 Cca04g00756 04 7599492 7602123 PCT