Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00752 ATGGAAATTGATCTGAACCATGAAGTGACCGAGGTTGAGAATAATGCACTCTGTGATGGGGAATGTGAGAAAGGTGGTGGTGCTGGTGGTTGGTCCTCTTCAACTTGTTCATCATCTAGTTCCTCTTCAGCTCATGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGCGCTGGCCCTCTCACCTCTCTTCCCAGGAAGGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCCTTTCACACCAATGGAGATTCCCACCTATGATCTCCATCCACAGATCTTTTGCAGGGTTGTCAATGTCCAACTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGGCTGAGTTGGAAGGGATGCATTCAGAGGGCAAAGAACTTGAGGAATTGGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTCTGCAAAACACTAACTGCCTCTGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCCTCACAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCACATTTACAGAGGTCAGCCAAGAAGGCATCTACTCACTACTGGTTGGAGTATTTTTGTGAGCCAAAAGAATCTTGTTTCTGGCGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGAACTTCCTGAATCAATTATCGGTAGCCAGAACTGTTACCCCAATGTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAATTTCATGTTTTCTACAGTCCAAGGGCAAGTCACGCAGATTTTGTTGTTCCTTACCAAAAATATGTTAAGAGCATCAATAATCCAGTGAGCATTGGGACAAGATTCAAAATAAGATTGGAAATGGACGAATCTCAAGAAAGGAGGTGTAGTAGTGGCACCTTGATTGGAACGAGTGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCACCAAGACCGCGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTCCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCACCTCATCACTGCAGCACGAGGCAGTGGGTTGGTGGGCTTTGAGGAGTCTGTAAGATCACCTAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACTCTACTACGGATGTGATGCAGTAACCAAGCCACCAGGTTTTGAGATGAACTCTTCGAGTCATCCAAATCTTGCATCAGCTGAAGTAAGAAAGGTCACCACTTCTGAGCTTAGTAGTGTTCACCCTTTCAGTTATGCAAGCTTTGTGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCAACTGAAATCCCTGACTGGAAATGTTGATTTGAACCTTGGTGCTTGGGGAATGCCCAATCTAAGTTGCTCAACTTTCAACCTCCATCAAGCAACCAAACCCAACTTTCAATCTGCACTTTTTCCTTATGGGGATATTCACCAACCTGGTCAAACTAGCTTGTTTTGCTCAAAACCCACCGGTTTTCAGAGAGAGAATGCCCCATTTAACAAGCCACCAACTCAGGGAGGGATAATTGTAAATGAAGTTGGAAGATCAGATCTCCCAAATGAACATAAGCTGCAGGACAATATTTCTGCTGCTGCTGCTTCATTGGGGGCTCCAAATATGGGGGTTCCTAGTGACAACAATGCCCAGGGAAAGGTAAATGGCTGCAAACTATTCGGGTTTCATTTGTCTGGGGAAGCTGCTACCCAGAATTTACCGAACTCTGCTAAAAGGAGCTGCACAAAGGTGAGGGATGATAACAACAAAATTATGTTATGA 2049 0.451 MEIDLNHEVTEVENNALCDGECEKGGGAGGWSSSTCSSSSSSSAHVSSSYLELWHACAGPLTSLPRKGNVVVYFPQGHLEQVASFSPFTPMEIPTYDLHPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMHSEGKELEELGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNELPESIIGSQNCYPNVLSSVANAISTKSKFHVFYSPRASHADFVVPYQKYVKSINNPVSIGTRFKIRLEMDESQERRCSSGTLIGTSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHLITAARGSGLVGFEESVRSPKVLQGQENAGFVSLYYGCDAVTKPPGFEMNSSSHPNLASAEVRKVTTSELSSVHPFSYASFVETNRFPRVLQGQEICQLKSLTGNVDLNLGAWGMPNLSCSTFNLHQATKPNFQSALFPYGDIHQPGQTSLFCSKPTGFQRENAPFNKPPTQGGIIVNEVGRSDLPNEHKLQDNISAAAASLGAPNMGVPSDNNAQGKVNGCKLFGFHLSGEAATQNLPNSAKRSCTKVRDDNNKIML 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00752 682 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 675 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca04g00752 682 SMART B3_2 164 266 IPR003340 GO:0003677
Cca04g00752 682 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Cca04g00752 682 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Cca04g00752 682 PANTHER AUXIN RESPONSE FACTOR 9 675 - -
Cca04g00752 682 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca04g00752 682 Gene3D - 162 266 IPR015300 -
Cca04g00752 682 SUPERFAMILY DNA-binding pseudobarrel domain 156 274 IPR015300 -
Cca04g00752 682 Gene3D - 327 398 - -
Cca04g00752 682 CDD B3_DNA 162 264 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00752 Cca-Chr4 7529785 7536809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00752 47 680 B3 DNA Binding Superfamily AT5G60450 56.481 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca04g00752 B3 1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00752 - - gmx:100783513 1190.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00752 04 7529785 7536809 Cca04g00752 04 7529785 7536809 ECH
Cca10g00497 10 5183392 5189030 Cca04g00752 04 7529785 7536809 PCT