Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00749 | ATGGATTTGGCAACAAGCATCAAGGAAAAATTGAACTATTTCCGTATAAAAGAGCTAAAAGATGTGCTCACTCAGTTACAACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCCGTTCTCTCAGATGAACAAGTTTCGAAAATGTGGGCTAAGAAGAATGCTGTTGGAAAAGAACAGGTGGCCAAATTAGTGGATGATACATATAGGAAAATGCAGATATCTGGGGCCACTGATCTAGCATCCAAGGGGCAGGGTGCATCAGATAGCAGTAGTGTAAaagttaaaggcgaatttgatgtaaaagttaaaggtgaatttgaTGATTCCTTTCAACCAGATGCAAAGATTCGCTGTCTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTGCAGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTCTGTCGCGTTTCTCGTGCACACCCATTTTGGGTTTCAGTGGCACACCCTTTGCATCCTGTGAAGTTGACTACAACCAGCAACCCAACTGATGGAAACAACCCAGTTCAGAGTGTCGAGAGAACATTTCAACTTACTAGAGCAGACAAAGACTTGGTTTCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAGTGGCCACTGTATGCAGACCTGCAGGTCAATGGTGTTCCCGTTCGTGCAACTAACAGACCTGGTTCCCAATTGCTTGGTGCTAATGGTCGGGATGACGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGGAAGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTCGAAAGCGCAGTATGCAGCAGATCCTAAACTTAATTCCAAGGGAATCTGATGGTGAGCAATTTGAAGATGCTCTTGCACGTGTCTGCCGTTGTGTGGGGGGCGGAAATGCAGCTGATGATGCCGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTCACTATCAACCTTCGTTGTCCTATGAGTGGTTCGAGAATGAAGGTTGCTGGAAGATTCAAACCCTGTATTCACATGGGCTGCTTTGATCTTGAAGTTTTTGTGGAGATGAATCAGCGATCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATGAATTGTGGTGAAGAAATTGCAGAGGTTGAGGTAAAGCCTGATGGTTCTTGGCGTGTTAAGGTAAAGAGTGAAAGTGAACGCCAGGAATTAGGAAATCTAGCACAGTGGCACCTCCCAGATGGATCTCTGTGTGTTTCAACTGATGGAGATGTCAAGAGAGTGGATACATTGAAGCAGGTCAAACAGGAAGGTATTTCAGACAGTCCTACTGGTTTAAAACTTGGCATCAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCCTCTGGTAATAAATTGAAAGGGCTTTTTGGAAATCCCGAACATGTTGTTATTCCAATGAGCAGCAGTGCCACAGGAAGTGGCCGGGATGGTGATGATCCTAGTGTAAATCAGGGTGGTGGGGGGCATATCGACTATTCCTCTCTGAATGGGATGGAGATGGATTCTCTGTGTCTCAATAATGTTGGTTTAGCATGTGAATTTACTGCACACAACACTTCTGCTCAGGTGGGTGGTGCAGAAGTTATTGTCCTTAGTGATTCTGATGAAGACAATAATAACCAAAATGATGCTACAGATGGTTACTCTGTACCACCACCTGTAATTGTTGATTCATATGCTGAAGATCATAATCTTGGTGGAAATTCATGCTTAGGACTCTTTCATAATGATGATGATTTTGGGATGCCTTCTCTGTGGTCATTGCCTTCTGGAACTCAGGCTGGTCCTGGATTCCAATTGTTTGGTTCTGATGCAGATGTGCCTGATACATTGGTCCATCTGCAGCATGGTCCTATTAATTGTTCCTCATCACTAAATGGTTATGCATTGGCTCCCGATACTGCTTTGGGATCCGCTAGTATCTTGCAAGATTCCTCTGCTGGTCGTTCGGATGCTGATTTGAATGGTGGTCTAGTTGACAATCCATTGGCATTTGGTGGAGATGATCCCTCACTTCAGATATTTCTTCCTACCAGACCAGCAGATTCATCCATGCAGAATGAATTGAGAGATCAGGCGAATGTGGCTAATGGTGTCTGCACTGAGGACTGGATATCCCTTAGTCTTGGAGGTGGTGCTTCTGGTAGCAATGGTGATGCTTCCACTCAAAATGGGTTGAACTCTAGACATCAAATCCCAACCAGAGAAGATGCCACAAATACTTTGGATGAAACTGTACACTCTTAA | 2499 | 0.4278 | MDLATSIKEKLNYFRIKELKDVLTQLQLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKGEFDVKVKGEFDDSFQPDAKIRCLCGSRLETEDLVKCDDPRCHVWQHISCVIIPEKPAEGIPPVPDKFYCELCRVSRAHPFWVSVAHPLHPVKLTTTSNPTDGNNPVQSVERTFQLTRADKDLVSKPEFDVEAWCMLLNDKVPFRMQWPLYADLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGSDARIFCLGVRIVRKRSMQQILNLIPRESDGEQFEDALARVCRCVGGGNAADDADSDSDLEVVSDTFTINLRCPMSGSRMKVAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMMNCGEEIAEVEVKPDGSWRVKVKSESERQELGNLAQWHLPDGSLCVSTDGDVKRVDTLKQVKQEGISDSPTGLKLGIRKNRNGVWEVSKPEGTNTSSGNKLKGLFGNPEHVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSSLNGMEMDSLCLNNVGLACEFTAHNTSAQVGGAEVIVLSDSDEDNNNQNDATDGYSVPPPVIVDSYAEDHNLGGNSCLGLFHNDDDFGMPSLWSLPSGTQAGPGFQLFGSDADVPDTLVHLQHGPINCSSSLNGYALAPDTALGSASILQDSSAGRSDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNELRDQANVANGVCTEDWISLSLGGGASGSNGDASTQNGLNSRHQIPTREDATNTLDETVHS | 832 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00749 | 832 | CDD | PHD_Bye1p_SIZ1_like | 122 | 173 | - | - | |
Cca04g00749 | 832 | SMART | PHD_3 | 122 | 174 | IPR001965 | - | |
Cca04g00749 | 832 | ProSiteProfiles | Zinc finger SP-RING-type profile. | 354 | 437 | IPR004181 | GO:0008270 | |
Cca04g00749 | 832 | SUPERFAMILY | SAP domain | 2 | 64 | IPR036361 | - | |
Cca04g00749 | 832 | SUPERFAMILY | FYVE/PHD zinc finger | 115 | 177 | IPR011011 | - | |
Cca04g00749 | 832 | Pfam | PHD-finger | 122 | 175 | IPR019787 | - | |
Cca04g00749 | 832 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 180 | IPR013083 | - | |
Cca04g00749 | 832 | PANTHER | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN | 9 | 806 | - | - | |
Cca04g00749 | 832 | SMART | sap_9 | 11 | 45 | IPR003034 | - | |
Cca04g00749 | 832 | ProSiteProfiles | SAP motif profile. | 11 | 45 | IPR003034 | - | |
Cca04g00749 | 832 | Coils | Coil | 16 | 36 | - | - | |
Cca04g00749 | 832 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 345 | 455 | IPR013083 | - | |
Cca04g00749 | 832 | MobiDBLite | consensus disorder prediction | 549 | 573 | - | - | |
Cca04g00749 | 832 | Gene3D | SAP domain | 1 | 62 | IPR036361 | - | |
Cca04g00749 | 832 | MobiDBLite | consensus disorder prediction | 797 | 819 | - | - | |
Cca04g00749 | 832 | PANTHER | SAP DOMAIN-CONTAINING PROTEIN-RELATED | 9 | 806 | - | - | |
Cca04g00749 | 832 | MobiDBLite | consensus disorder prediction | 797 | 832 | - | - | |
Cca04g00749 | 832 | Pfam | SAP domain | 12 | 42 | IPR003034 | - | |
Cca04g00749 | 832 | ProSitePatterns | Zinc finger PHD-type signature. | 123 | 173 | IPR019786 | - | |
Cca04g00749 | 832 | Pfam | MIZ/SP-RING zinc finger | 367 | 415 | IPR004181 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00749 | Cca-Chr4 | 7503278 | 7514047 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Cca04g00749 | PHD | 2.1e-07 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00749 | - | - | gmx:100793735 | 1487.63 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g00749 | 04 | 7503278 | 7514047 | Cca04g00749 | 04 | 7503278 | 7514047 | ECH | |
Cca10g00496 | 10 | 5169714 | 5182147 | Cca04g00749 | 04 | 7503278 | 7514047 | PCT |