Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00749 ATGGATTTGGCAACAAGCATCAAGGAAAAATTGAACTATTTCCGTATAAAAGAGCTAAAAGATGTGCTCACTCAGTTACAACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCCGTTCTCTCAGATGAACAAGTTTCGAAAATGTGGGCTAAGAAGAATGCTGTTGGAAAAGAACAGGTGGCCAAATTAGTGGATGATACATATAGGAAAATGCAGATATCTGGGGCCACTGATCTAGCATCCAAGGGGCAGGGTGCATCAGATAGCAGTAGTGTAAaagttaaaggcgaatttgatgtaaaagttaaaggtgaatttgaTGATTCCTTTCAACCAGATGCAAAGATTCGCTGTCTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTGCAGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTCTGTCGCGTTTCTCGTGCACACCCATTTTGGGTTTCAGTGGCACACCCTTTGCATCCTGTGAAGTTGACTACAACCAGCAACCCAACTGATGGAAACAACCCAGTTCAGAGTGTCGAGAGAACATTTCAACTTACTAGAGCAGACAAAGACTTGGTTTCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAGTGGCCACTGTATGCAGACCTGCAGGTCAATGGTGTTCCCGTTCGTGCAACTAACAGACCTGGTTCCCAATTGCTTGGTGCTAATGGTCGGGATGACGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGGAAGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTCGAAAGCGCAGTATGCAGCAGATCCTAAACTTAATTCCAAGGGAATCTGATGGTGAGCAATTTGAAGATGCTCTTGCACGTGTCTGCCGTTGTGTGGGGGGCGGAAATGCAGCTGATGATGCCGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTCACTATCAACCTTCGTTGTCCTATGAGTGGTTCGAGAATGAAGGTTGCTGGAAGATTCAAACCCTGTATTCACATGGGCTGCTTTGATCTTGAAGTTTTTGTGGAGATGAATCAGCGATCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATGAATTGTGGTGAAGAAATTGCAGAGGTTGAGGTAAAGCCTGATGGTTCTTGGCGTGTTAAGGTAAAGAGTGAAAGTGAACGCCAGGAATTAGGAAATCTAGCACAGTGGCACCTCCCAGATGGATCTCTGTGTGTTTCAACTGATGGAGATGTCAAGAGAGTGGATACATTGAAGCAGGTCAAACAGGAAGGTATTTCAGACAGTCCTACTGGTTTAAAACTTGGCATCAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCCTCTGGTAATAAATTGAAAGGGCTTTTTGGAAATCCCGAACATGTTGTTATTCCAATGAGCAGCAGTGCCACAGGAAGTGGCCGGGATGGTGATGATCCTAGTGTAAATCAGGGTGGTGGGGGGCATATCGACTATTCCTCTCTGAATGGGATGGAGATGGATTCTCTGTGTCTCAATAATGTTGGTTTAGCATGTGAATTTACTGCACACAACACTTCTGCTCAGGTGGGTGGTGCAGAAGTTATTGTCCTTAGTGATTCTGATGAAGACAATAATAACCAAAATGATGCTACAGATGGTTACTCTGTACCACCACCTGTAATTGTTGATTCATATGCTGAAGATCATAATCTTGGTGGAAATTCATGCTTAGGACTCTTTCATAATGATGATGATTTTGGGATGCCTTCTCTGTGGTCATTGCCTTCTGGAACTCAGGCTGGTCCTGGATTCCAATTGTTTGGTTCTGATGCAGATGTGCCTGATACATTGGTCCATCTGCAGCATGGTCCTATTAATTGTTCCTCATCACTAAATGGTTATGCATTGGCTCCCGATACTGCTTTGGGATCCGCTAGTATCTTGCAAGATTCCTCTGCTGGTCGTTCGGATGCTGATTTGAATGGTGGTCTAGTTGACAATCCATTGGCATTTGGTGGAGATGATCCCTCACTTCAGATATTTCTTCCTACCAGACCAGCAGATTCATCCATGCAGAATGAATTGAGAGATCAGGCGAATGTGGCTAATGGTGTCTGCACTGAGGACTGGATATCCCTTAGTCTTGGAGGTGGTGCTTCTGGTAGCAATGGTGATGCTTCCACTCAAAATGGGTTGAACTCTAGACATCAAATCCCAACCAGAGAAGATGCCACAAATACTTTGGATGAAACTGTACACTCTTAA 2499 0.4278 MDLATSIKEKLNYFRIKELKDVLTQLQLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKGEFDVKVKGEFDDSFQPDAKIRCLCGSRLETEDLVKCDDPRCHVWQHISCVIIPEKPAEGIPPVPDKFYCELCRVSRAHPFWVSVAHPLHPVKLTTTSNPTDGNNPVQSVERTFQLTRADKDLVSKPEFDVEAWCMLLNDKVPFRMQWPLYADLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGSDARIFCLGVRIVRKRSMQQILNLIPRESDGEQFEDALARVCRCVGGGNAADDADSDSDLEVVSDTFTINLRCPMSGSRMKVAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMMNCGEEIAEVEVKPDGSWRVKVKSESERQELGNLAQWHLPDGSLCVSTDGDVKRVDTLKQVKQEGISDSPTGLKLGIRKNRNGVWEVSKPEGTNTSSGNKLKGLFGNPEHVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSSLNGMEMDSLCLNNVGLACEFTAHNTSAQVGGAEVIVLSDSDEDNNNQNDATDGYSVPPPVIVDSYAEDHNLGGNSCLGLFHNDDDFGMPSLWSLPSGTQAGPGFQLFGSDADVPDTLVHLQHGPINCSSSLNGYALAPDTALGSASILQDSSAGRSDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNELRDQANVANGVCTEDWISLSLGGGASGSNGDASTQNGLNSRHQIPTREDATNTLDETVHS 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00749 832 CDD PHD_Bye1p_SIZ1_like 122 173 - -
Cca04g00749 832 SMART PHD_3 122 174 IPR001965 -
Cca04g00749 832 ProSiteProfiles Zinc finger SP-RING-type profile. 354 437 IPR004181 GO:0008270
Cca04g00749 832 SUPERFAMILY SAP domain 2 64 IPR036361 -
Cca04g00749 832 SUPERFAMILY FYVE/PHD zinc finger 115 177 IPR011011 -
Cca04g00749 832 Pfam PHD-finger 122 175 IPR019787 -
Cca04g00749 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 180 IPR013083 -
Cca04g00749 832 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 806 - -
Cca04g00749 832 SMART sap_9 11 45 IPR003034 -
Cca04g00749 832 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Cca04g00749 832 Coils Coil 16 36 - -
Cca04g00749 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 455 IPR013083 -
Cca04g00749 832 MobiDBLite consensus disorder prediction 549 573 - -
Cca04g00749 832 Gene3D SAP domain 1 62 IPR036361 -
Cca04g00749 832 MobiDBLite consensus disorder prediction 797 819 - -
Cca04g00749 832 PANTHER SAP DOMAIN-CONTAINING PROTEIN-RELATED 9 806 - -
Cca04g00749 832 MobiDBLite consensus disorder prediction 797 832 - -
Cca04g00749 832 Pfam SAP domain 12 42 IPR003034 -
Cca04g00749 832 ProSitePatterns Zinc finger PHD-type signature. 123 173 IPR019786 -
Cca04g00749 832 Pfam MIZ/SP-RING zinc finger 367 415 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00749 Cca-Chr4 7503278 7514047 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca04g00749 PHD 2.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00749 - - gmx:100793735 1487.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00749 04 7503278 7514047 Cca04g00749 04 7503278 7514047 ECH
Cca10g00496 10 5169714 5182147 Cca04g00749 04 7503278 7514047 PCT