Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00740 ATGGACTTAACCCAAGACTCTCACTACCTCTTGTCGGAGCAGCGCCGCGAGCTCGCCGCCGCGGAGGCCGCCGAATCCGACCTCGACTTCGCCTTCCGCCTCCAGTTACAGGAGGCCCTCGCCGCCTCCCTCGCCATGCAACCCTCCTCCTCTTCCTCCGCCGCCGCAATGAAAGAACCCATGGTCGTCGACGACGACGGCGGCGCCCTGAGCGCGGCGGCGCTCCAGCGCGAGGAGCTTTCGCGCACGGAGCTCGAAATGAGGGACCGCGAACAGAGCGAGATGGAGATGCGGAAGACGAGGGAGGATCTGAGCCGTCTGATCCACGATCAGAAGGTGGCGAGGGAGATCTCATCGATTCCCGAGAGGGAGTGGGTGCAGTGGGGCGATAACTTCGAGAAACCGTTCGGCGAGGGTGGTTCCTCTTCCTCGGGAAATGTAGGGGAAGGTGTGGCTAGGGTTTACTTCAAGGGTTCAGTGAGTGTGGAGAATGTGAGGGGCGAGAGGGTCGTGTTTGCTGGGATTGGTGTTGCGATTTGTGACATTGCTGGTAATTCATTATTCGAGGTTTCTAAGCCGATTGCTGGGAGTGGCACTAGCAAGGTCGCGGCAGAGATTAAGGCTTTGATTGAAGCTTTGGATGCCGCCATTTCTTTGGACTTGAGGCGCGTCGATTATTGTTGCGATTATTACCCCCTTTTCCAATTTGTGAATGGGAAGTGGCCTGCAAGGCAGCGGAAGATTGCTATGCTGCTTAATAAAGTGAATCTGCTTCAAAGGGAGTTTACGTACTGTAATCCGAGGCTTGTGACCAGACGTGATGTCAAGTTTGTGTTTAAGCTTGCAAGAGATGCGATTGTGTCTCAGTTCACGAGGCCTCTGGAATCTGGGAGTGGGAGTCTGAATGATACTTGTGTTATCTGTTTGGAGGATACTGATGAGAGTCAGTTTTTTTCTGTTGATGGTTGTCAACACCGCTATTGCTTTTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAATGTCCTCATGAGGGGTGCAAGTATGAGCTTCTAGTTGACAGCTGCCAGAAGTTCTTAACACCTAAGTTAAGTGAGACCATGCGGCAACAAAAATTGGAAGCTTCAATTCCTTTTGCTGAAAGAATTTATTGCCCTTATCCAAGATGCTCTGTATTAATGTCAAAAACTGGGGTCATAGAGTACTCCAGAAATCTTATCGGTCAATCTGAACAATTAGGGCCCATGAAATGCATAAAATGTCATGGTCTTTTCTGTTTCAACTGCAAGGTCCCTTGGCACAGTGGTATGACATGTTTTACTTACAAAAGGTTGAATCCTAACCCTCCTGCAGAAGATTTGAAGCTGAAGTCTTTGGCATCAAGGAGCCTATGGCGGCAATGTGTGAAGTGCAACCATATGATTGAACTTGCGGAAGGTTGCTACCACATGACTTGCAGATGTGGTACTGAATTTTGTTACAACTGTGGAGCTGAGTGGAAGAACAAAAAATCAACGTGTGCTTGCCCATTTTGGGCGGAGAACAATATTTGGTTAGAGGATCATGATAGGGATTTGGAAGAAGAGGTTGATGATGATGGTGATGTCGATAGCTCAGATTATTCTGATGATTATTATTAA 1659 0.4901 MDLTQDSHYLLSEQRRELAAAEAAESDLDFAFRLQLQEALAASLAMQPSSSSSAAAMKEPMVVDDDGGALSAAALQREELSRTELEMRDREQSEMEMRKTREDLSRLIHDQKVAREISSIPEREWVQWGDNFEKPFGEGGSSSSGNVGEGVARVYFKGSVSVENVRGERVVFAGIGVAICDIAGNSLFEVSKPIAGSGTSKVAAEIKALIEALDAAISLDLRRVDYCCDYYPLFQFVNGKWPARQRKIAMLLNKVNLLQREFTYCNPRLVTRRDVKFVFKLARDAIVSQFTRPLESGSGSLNDTCVICLEDTDESQFFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKYELLVDSCQKFLTPKLSETMRQQKLEASIPFAERIYCPYPRCSVLMSKTGVIEYSRNLIGQSEQLGPMKCIKCHGLFCFNCKVPWHSGMTCFTYKRLNPNPPAEDLKLKSLASRSLWRQCVKCNHMIELAEGCYHMTCRCGTEFCYNCGAEWKNKKSTCACPFWAENNIWLEDHDRDLEEEVDDDGDVDSSDYSDDYY 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00740 552 Pfam IBR domain, a half RING-finger domain 385 445 IPR002867 -
Cca04g00740 552 Pfam IBR domain, a half RING-finger domain 459 513 IPR002867 -
Cca04g00740 552 ProSiteProfiles Zinc finger RING-type profile. 305 349 IPR001841 -
Cca04g00740 552 ProSitePatterns Zinc finger RING-type signature. 323 332 IPR017907 -
Cca04g00740 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 387 IPR013083 -
Cca04g00740 552 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 526 - -
Cca04g00740 552 Gene3D - 443 548 - -
Cca04g00740 552 Pfam Reverse transcriptase-like 173 285 IPR002156 GO:0003676|GO:0004523
Cca04g00740 552 MobiDBLite consensus disorder prediction 533 552 - -
Cca04g00740 552 ProSiteProfiles TRIAD supradomain profile. 301 519 IPR044066 -
Cca04g00740 552 SUPERFAMILY RING/U-box 304 384 - -
Cca04g00740 552 SMART ibrneu5 458 513 IPR002867 -
Cca04g00740 552 SMART ibrneu5 372 445 IPR002867 -
Cca04g00740 552 Coils Coil 90 110 - -
Cca04g00740 552 Gene3D - 151 287 IPR036397 GO:0003676
Cca04g00740 552 SUPERFAMILY RING/U-box 459 522 - -
Cca04g00740 552 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 526 IPR031127 GO:0004842|GO:0016567
Cca04g00740 552 SUPERFAMILY RING/U-box 386 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00740 Cca-Chr4 7411309 7415860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00740 153 504 C3H Transcription Factor Family AT2G19610 33.894 1.28e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00740 - - gmx:100790037 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00740 04 7411309 7415860 Cca04g00740 04 7411309 7415860 ECH