Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00739 ATGGAGAGTAGTGACACTTGCTCTGCCCCACTTTCTCACTCTCCCACATCCTCTTCTTCCTCACCCCCCACAGTTGTGATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGACAAATGTGTTTTGGCACCTTATTTCCCTCCCACTGAACCTTCCAAGTTCACCATTGCACACCGTGTATTTGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCGCAGAGAGCTGATGCAGTGACCAGCATGGTTTATGAGGCTAGTGCAAGAATAAGGGACCCTGTTTATGGCTGTGCAGGAGCAATTTGCCAGCTCCAAAAGCAGGTGAATGAACTTCAAGCACAATTAGCCAAGGCACAAGCTGAGCTTGTAAACATGCAATTTCAGCAAGCCAATCTTGTGGCTCTAATTTGCATGGAAATGGCACAGAGCCCACAACAGGAATCACCACAACAATCAGTGGATAATATTGTCATTTCAACTCCTCCCCACAGTGGTGGCTATCAAAGTGGCATGAACTTCTTAATTGAGGAGAACACTAGCCTAAACTCACTATGGGAGCCTCTTTGGACTTGA 594 0.4697 MESSDTCSAPLSHSPTSSSSSPPTVVMSPCAACKILRRRCADKCVLAPYFPPTEPSKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQFQQANLVALICMEMAQSPQQESPQQSVDNIVISTPPHSGGYQSGMNFLIEENTSLNSLWEPLWT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00739 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 17 194 - -
Cca04g00739 197 Coils Coil 108 135 - -
Cca04g00739 197 MobiDBLite consensus disorder prediction 1 25 - -
Cca04g00739 197 ProSiteProfiles LOB domain profile. 28 129 IPR004883 -
Cca04g00739 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 194 - -
Cca04g00739 197 Pfam Lateral organ boundaries (LOB) domain 29 126 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00739 Cca-Chr4 7381720 7384153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00739 25 197 AS2 family AT1G07900 65.909 7.65e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca04g00739 LOB 2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00739 - - ccaj:109798760 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00739 04 7381720 7384153 Cca04g00739 04 7381720 7384153 ECH
Cca10g00491 10 5113691 5115608 Cca04g00739 04 7381720 7384153 ECH
Cca10g00491 10 5113691 5115608 Cca04g00739 04 7381720 7384153 PCT