Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00735 | ATGGATCCTTCTAGTGGACAACACCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAACAGGATAGGAAGCCAAGGCCTCAGCCAGAGCAAGCTCTGAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTATAGCCTCTCTCAGCCAAGGTATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGGACACTGAGGAATGTTCCTGTGGGAGGAGGGTGCAGGAAGAACAAGAGGtcatcatcaacatcatcttcaacatcaaagagagttcaagatcaagcattcacacccaatcaCAACCCTCTCACTGGCCTCCCTTCACTGTCTTATGACTCTAATGACCTCACCCTTGCACTAGCAAGGCTTCAAAAGCAGTCATGTGGGCAATTGAGTTATGATGAGCATGACCTTTCAATTTTGGGGAACCCCACAAGCACCCCATGTGACATCCTTGGCAATCATGGCATGAACCCCTCATCCACAAACCCAGGGTTCTTGGATGCCCTTAGAAGTGGGTTCCTTGGAACCCAAAGTAACATGCACAATATGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGGGTTGGGGTTAGTGGAGACATGATGATGCCTTATGATCAAGAAATGAGTATTGCCACCACACAGGCAGTGTCAGTCACTACCATGAAACAAGAACTTTGCAATGGAAGGGAACAAAGTGAGAATAGGGTGTTGTGGGGTTTCCCTTGGCAACTCAATGGAGACACCAACATGGGTGAAATTGACTCAGGGAGAGCTAGTTGGAATGGACTCACACCATCATGGCATGGACTTATCAATAGTCCCCTAATGTAG | 906 | 0.4448 | MDPSSGQHQQMSNQSLENMLACSKAQQDRKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSTSSSTSKRVQDQAFTPNHNPLTGLPSLSYDSNDLTLALARLQKQSCGQLSYDEHDLSILGNPTSTPCDILGNHGMNPSSTNPGFLDALRSGFLGTQSNMHNMYYGYGNGDMGEVDNGNACGGVGVSGDMMMPYDQEMSIATTQAVSVTTMKQELCNGREQSENRVLWGFPWQLNGDTNMGEIDSGRASWNGLTPSWHGLINSPLM | 301 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00735 | 301 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Cca04g00735 | 301 | ProSiteProfiles | Zinc finger Dof-type profile. | 39 | 93 | IPR003851 | GO:0003677|GO:0006355 | |
Cca04g00735 | 301 | MobiDBLite | consensus disorder prediction | 90 | 121 | - | - | |
Cca04g00735 | 301 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 7 | 300 | IPR045174 | GO:0003700|GO:0006355 | |
Cca04g00735 | 301 | ProSitePatterns | Zinc finger Dof-type signature. | 41 | 77 | IPR003851 | GO:0003677|GO:0006355 | |
Cca04g00735 | 301 | PANTHER | DOF ZINC FINGER PROTEIN DOF3.2-LIKE | 7 | 300 | - | - | |
Cca04g00735 | 301 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cca04g00735 | 301 | MobiDBLite | consensus disorder prediction | 83 | 121 | - | - | |
Cca04g00735 | 301 | Pfam | Dof domain, zinc finger | 37 | 93 | IPR003851 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00735 | Cca-Chr4 | 7327650 | 7330013 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00735 | 1 | 301 | C2C2-Dof Transcription Factor Family | AT2G28510 | 40.000 | 1.19e-55 | 180 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Cca04g00735 | zf-Dof | 6.2e-34 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00735 | - | - | gmx:100799737 | 511.916 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g00735 | 04 | 7327650 | 7330013 | Cca04g00735 | 04 | 7327650 | 7330013 | ECH | |
Cca10g00487 | 10 | 5071983 | 5073870 | Cca04g00735 | 04 | 7327650 | 7330013 | PCT |