Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00731 ATGGTTCGCTTCATAGAAGACTTGCCGCCAATGGATCTGATGCGCTCCGAGATGATGACGTTCGTCCAGCTCATCATCCCCGCCGAGTCCGCTCACCGCGCCATCACCTATTTAGGCCAACTCGGCTTCCTTCAATTTCGCGACTTAAATGCTGAAAAAAGCCCCTTCCAGAGAACATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCAAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCGCATCCGGTCTTGCAATCAGATATTTATCTGGAGGATTTAGAGATACAACTTGCTGAGCATGAGCATGAGCTAATTGAAATGAACTCTAATAGTGAGAAACTTCGGCAATCATATAACGAACTCCTAGAGTTCAAGATTGTATTACAAAAGGCATGTGGTTTTCTTGTTTCAAATCATGGCAAAGCCATTTCAGAAGAGAGAGAACTGGAGGAGAACGTTTTCTCAAACGAAAACTATGTTGAGACACCATTTTTGTTTGAACAGGAAGTGAGGCCTGCACCATCAAATCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAAGTTCTTAGGTTTGAAAGGATGTTGTTTCGTGCTACAAGAGGCAATATGCTTTTCAATCAGGCACCTGCTGATGAACAAATCGTGGATCCTATTTCAGCCGAGATGGTTGAGAAAACTGTGTTTGTAGTTTTTTTCTCTGGGGAGCAAGCAAGAACAAAGATTCTGAAAATTTGTGATGCATTTGGTGCAAATTGTTACCCTGTTCCTGAAGACATAAGTAAACAGAGGCAAATAACTTCGGAGGTTTCATCACGTCTTACTGACTTAGAGGCAACTCTGGATGCTGGGATTAGGCATCGGAATAAGGCTCTAGCTTTTGTAGAAGCCCATTTTTCAGAATGGATGGACATGGTAAGAAGAGAGAAGGCTGTGTATGATACCCTGAACATGTTAAATTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTATATTTGCAAAAACACAGATTCAGGAGGCACTGCAACGGGCAACTTTTGACAGCAATTCGCAAATCGGCATAATCTTTCATTCAATGGATGCACTAGAATCACCACCTACATATTTTAGAACCAACAGTTTCACAAGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTATACAACTATTATATTCCCATTTCTTTTTGCGGTTATGTTTGGCGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCGTTGATTCTTATAGCACGTCAAAGCAAGCTCAGCACTCAGCGACTTGGAAGCTTTATGGAAATGTTATTTGGTGGGCGTTATGTGCTACTTTTGATGTCACTATTTTCAATCTATTGTGGGTTAATCTACAATGAATTCTTCTCTGTTCCTTTTCACATATTTGGCGCATCTGCTTACAAATGCCGAGATAATTCATGCAGGGATGCGCATACTACTGGCTTAGTAAAATACAGAGAACCATATCCATTTGGTGTGGATCCCAGTTGGCGGGGAAGCCGTTCAGAATTGGCTTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTGTTTGGTGTGGTGCACATGAATTTGGGAATTATATTAAGTTACTTCAACGCTTGTTTCTTTAGCAACTCACTGGATATAAGGTACCAGTTTGTGCCCCAGATGATTTTCCTTAACTGTCTATTTGGATATCTTTCCCTTCTCATCATTGTCAAGTGGTGTACTGGCTCTCAGGCAGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTCGACAATCTTGGCGAGAATCAATTGTTCTGGGGCCAAAGGCCACTTCAAGTTGTGCTATTGCTTTGGGCTTTAATTGCAGTTCCATGGATGCTCTTTCCAAAGCCTTTTATACTAAAGAAGCTTCATAACGAGAGATTTCAAGGACGCACTTATGGTATGCTTAATAGCTCTGAGGTTGATCTTGAGTTGGAACCAGATTCTGCCAGGCAACACCGTGAGGAATTCAATTTCAGTGAGGTCTTTGTCCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGCTTGGCGCACTCTGAACTTTCTACCGTTTTTTATGAGAAAGTCCTGCTTCTTGCTTGGGGGTATGACAATCTTGTCATTCGATTAGTGGGGCTAACTGTTTTTGCCTTTGCAACTGCCTTTATACTATTAATGATGGAGACTCTCAGTGCTTTTCTTCACGCCTTGCGTCTTCACTGGGTAGAATTCCAAAATAAATTCTACCATGGTGATGGATACAAGTTCAGACCTTTTTCCTTCGCCTCCTTAACAGAGGATGAAAATTGA 2457 0.4111 MVRFIEDLPPMDLMRSEMMTFVQLIIPAESAHRAITYLGQLGFLQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLMSSHPVLQSDIYLEDLEIQLAEHEHELIEMNSNSEKLRQSYNELLEFKIVLQKACGFLVSNHGKAISEERELEENVFSNENYVETPFLFEQEVRPAPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEQIVDPISAEMVEKTVFVVFFSGEQARTKILKICDAFGANCYPVPEDISKQRQITSEVSSRLTDLEATLDAGIRHRNKALAFVEAHFSEWMDMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSNSQIGIIFHSMDALESPPTYFRTNSFTSPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALILIARQSKLSTQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGASAYKCRDNSCRDAHTTGLVKYREPYPFGVDPSWRGSRSELAFLNSLKMKMSILFGVVHMNLGIILSYFNACFFSNSLDIRYQFVPQMIFLNCLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPFDNLGENQLFWGQRPLQVVLLLWALIAVPWMLFPKPFILKKLHNERFQGRTYGMLNSSEVDLELEPDSARQHREEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLTVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEDEN 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00731 818 Pfam V-type ATPase 116kDa subunit family 37 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cca04g00731 818 Coils Coil 99 126 - -
Cca04g00731 818 PIRSF ATP6V0A1 9 818 IPR026028 GO:0000220|GO:0046961
Cca04g00731 818 PANTHER VACUOLAR PROTON ATPASES 5 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cca04g00731 818 PANTHER VACUOLAR PROTON ATPASE A1 5 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00731 Cca-Chr4 7280610 7294478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00731 1 811 Primary Pumps ATPases(2) AT2G28520 78.896 0.0 1322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00731 K02154 - gmx:100800799 1516.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00731 04 7280610 7294478 Cca04g00731 04 7280610 7294478 ECH
Cca10g00486 10 5027917 5042058 Cca04g00731 04 7280610 7294478 PCT