Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00727 ATGCTCCGTATAGCGTGGCACTCGGCTGGAACCTACGACGTGAAGACGAAGGGCGGGGGTGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGCTGAACTTGCTCACGGTGCTAACAACGGACTTGACATCGCTGTTAGGTTGTTGGAGCCGGTTAAGGCGGAGTTTCCTATCCTGAGCTACGCCGATTTCTATCAGTTGGCTGGTGTTGTTGCCGTTGAGGTCACTGGTGGACCTGAAATTCCTTTCCATCCGGGAAGAGAGGACAAGCCTGAGCCACCACCAGAGGGTCGCTTGCCTGACGCAACTAAGGGTTCTGACCATTTGCGTGATGTGTTCGGAAAAGCTATGGGGCTCAGTGACCAGGATATTGTTGCTCTATCTGGTGGTCACACCCTTGGATCTTGTCACAAGGAGCGTTCTGGATTTGAGGGCCCCTGGACCACTAATCCTCTGATTTTTGACAACTCATACTTCAAGGAGCTGTTGAGTGGTGAGAAGGAAGGTCTCATTCAACTGCCTACTGACAAGTCTCTTTTGAGTGATCCTGTATTCCGCCCTCTGGTTGAGAAATATGCCGCGGATGAAGATGCCTTCTTCGCGGATTACGCTGAGTCTCATCTAAAGCTTTCTGAGCTTGGGTTTGCTGAAGCCTAA 774 0.4225 MLRIAWHSAGTYDVKTKGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAELAHGANNGLDIAVRLLEPVKAEFPILSYADFYQLAGVVAVEVTGGPEIPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTLGSCHKERSGFEGPWTTNPLIFDNSYFKELLSGEKEGLIQLPTDKSLLSDPVFRPLVEKYAADEDAFFADYAESHLKLSELGFAEA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00727 257 ProSiteProfiles Plant heme peroxidase family profile. 81 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 71 257 IPR044831 GO:0004601|GO:0034599
Cca04g00727 257 Gene3D - 70 253 - -
Cca04g00727 257 SUPERFAMILY Heme-dependent peroxidases 71 253 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 ProSitePatterns Peroxidases proximal heme-ligand signature. 162 172 IPR019793 -
Cca04g00727 257 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Haem peroxidase superfamily signature 98 115 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Haem peroxidase superfamily signature 116 128 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Haem peroxidase superfamily signature 162 177 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 Gene3D Peroxidase, domain 2 139 246 - -
Cca04g00727 257 MobiDBLite consensus disorder prediction 122 145 - -
Cca04g00727 257 SUPERFAMILY Heme-dependent peroxidases 1 22 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Plant ascorbate peroxidase signature 72 96 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Plant ascorbate peroxidase signature 230 254 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Plant ascorbate peroxidase signature 156 177 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Plant ascorbate peroxidase signature 178 202 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Plant ascorbate peroxidase signature 97 115 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Plant ascorbate peroxidase signature 137 154 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PRINTS Plant ascorbate peroxidase signature 116 128 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca04g00727 257 PANTHER L-ASCORBATE PEROXIDASE 1, CYTOSOLIC 71 257 - -
Cca04g00727 257 MobiDBLite consensus disorder prediction 117 145 - -
Cca04g00727 257 Pfam Peroxidase 71 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00727 Cca-Chr4 7256183 7258243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00727 79 253 Peroxidase AT4G17690 31.455 2.90e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00727 K00434 - gmx:606508 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00727 04 7256183 7258243 Cca04g00727 04 7256183 7258243 ECH