Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00723 | ATGAAAAAAATAAGCGCGATGTTAGATCTTAATCTCAATGTGGACTGGACCGAGTCGACTCAGAACGTCGACTCGGCGGTGTCGTTTGAGAAGTTTCAAGAAGGTTTGAGGCACCAAATGGCGGAGTCAGGGACTTCGAATTCCTCGGTGGTGAATGCGGACGGTTCCAGCAACGGCGGCGGAGACGAGGACTCGTGCTCCACGCGCGCCGATGACCTGTACACCTTCAATTTTGATATCCTCAAGGCGAACGACGTCGTAACGAGGGAGCTCTTTCCGGTGAGCGGTGGGGGAACTAAAGGAGAGTCCGATACGCCGTCGCTTTCGGCGAGGAATGGCTTGGTGGATCTCTCGTTCGATCGCGAGGGAGGGAACGGTGCGATGAAGGTGGTTCAGCCTCAGGTTCAGCCTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCGCAATACAGAGGGGTTACCTTTTACAGAAGGACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCAATTAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGGTTAGGAGGCTCAAGCATTTGGTGGATATGGAACTAGATGGTGTATCTGATTTGTTTTTTCACCGTTTTCTTACTGATGGGCAGATGAAGAATTTGTCCAAGGAGGAATTTGTACATATACTGCGTCGCCAAAGTACTGGTTTCTCGAGAGGAAGTTCTAAATACCGAGGAGTAACGCTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTGA | 894 | 0.5 | MKKISAMLDLNLNVDWTESTQNVDSAVSFEKFQEGLRHQMAESGTSNSSVVNADGSSNGGGDEDSCSTRADDLYTFNFDILKANDVVTRELFPVSGGGTKGESDTPSLSARNGLVDLSFDREGGNGAMKVVQPQVQPQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQVRRLKHLVDMELDGVSDLFFHRFLTDGQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK | 297 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00723 | 297 | MobiDBLite | consensus disorder prediction | 40 | 66 | - | - | |
Cca04g00723 | 297 | CDD | AP2 | 154 | 212 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00723 | 297 | Pfam | AP2 domain | 154 | 202 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00723 | 297 | SMART | rav1_2 | 154 | 216 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00723 | 297 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 248 | 297 | - | - | |
Cca04g00723 | 297 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 7 | 224 | - | - | |
Cca04g00723 | 297 | MobiDBLite | consensus disorder prediction | 40 | 64 | - | - | |
Cca04g00723 | 297 | ProSiteProfiles | AP2/ERF domain profile. | 154 | 210 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00723 | 297 | SUPERFAMILY | DNA-binding domain | 153 | 211 | IPR016177 | GO:0003677 | |
Cca04g00723 | 297 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 248 | 297 | - | - | |
Cca04g00723 | 297 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 7 | 224 | - | - | |
Cca04g00723 | 297 | MobiDBLite | consensus disorder prediction | 129 | 155 | - | - | |
Cca04g00723 | 297 | Gene3D | AP2/ERF domain | 153 | 212 | IPR036955 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00723 | Cca-Chr4 | 7216991 | 7221212 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00723 | 7 | 297 | AP2-EREBP Transcription Factor Family | AT2G28550 | 61.564 | 4.41e-90 | 267 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Cca04g00723 | AP2 | 3.4e-10 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00723 | K09284 | - | gmx:100812898 | 412.92 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g00723 | 04 | 7216991 | 7221212 | Cca04g00723 | 04 | 7216991 | 7221212 | ECH | |
Cca10g00482 | 10 | 4992733 | 4996232 | Cca04g00723 | 04 | 7216991 | 7221212 | ECH | |
Cca10g00482 | 10 | 4992733 | 4996232 | Cca04g00723 | 04 | 7216991 | 7221212 | PCT |