Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00723 ATGAAAAAAATAAGCGCGATGTTAGATCTTAATCTCAATGTGGACTGGACCGAGTCGACTCAGAACGTCGACTCGGCGGTGTCGTTTGAGAAGTTTCAAGAAGGTTTGAGGCACCAAATGGCGGAGTCAGGGACTTCGAATTCCTCGGTGGTGAATGCGGACGGTTCCAGCAACGGCGGCGGAGACGAGGACTCGTGCTCCACGCGCGCCGATGACCTGTACACCTTCAATTTTGATATCCTCAAGGCGAACGACGTCGTAACGAGGGAGCTCTTTCCGGTGAGCGGTGGGGGAACTAAAGGAGAGTCCGATACGCCGTCGCTTTCGGCGAGGAATGGCTTGGTGGATCTCTCGTTCGATCGCGAGGGAGGGAACGGTGCGATGAAGGTGGTTCAGCCTCAGGTTCAGCCTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCGCAATACAGAGGGGTTACCTTTTACAGAAGGACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCAATTAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGGTTAGGAGGCTCAAGCATTTGGTGGATATGGAACTAGATGGTGTATCTGATTTGTTTTTTCACCGTTTTCTTACTGATGGGCAGATGAAGAATTTGTCCAAGGAGGAATTTGTACATATACTGCGTCGCCAAAGTACTGGTTTCTCGAGAGGAAGTTCTAAATACCGAGGAGTAACGCTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTGA 894 0.5 MKKISAMLDLNLNVDWTESTQNVDSAVSFEKFQEGLRHQMAESGTSNSSVVNADGSSNGGGDEDSCSTRADDLYTFNFDILKANDVVTRELFPVSGGGTKGESDTPSLSARNGLVDLSFDREGGNGAMKVVQPQVQPQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQVRRLKHLVDMELDGVSDLFFHRFLTDGQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00723 297 MobiDBLite consensus disorder prediction 40 66 - -
Cca04g00723 297 CDD AP2 154 212 IPR001471 GO:0003700|GO:0006355
Cca04g00723 297 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Cca04g00723 297 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Cca04g00723 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 248 297 - -
Cca04g00723 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 7 224 - -
Cca04g00723 297 MobiDBLite consensus disorder prediction 40 64 - -
Cca04g00723 297 ProSiteProfiles AP2/ERF domain profile. 154 210 IPR001471 GO:0003700|GO:0006355
Cca04g00723 297 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Cca04g00723 297 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 248 297 - -
Cca04g00723 297 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 224 - -
Cca04g00723 297 MobiDBLite consensus disorder prediction 129 155 - -
Cca04g00723 297 Gene3D AP2/ERF domain 153 212 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00723 Cca-Chr4 7216991 7221212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00723 7 297 AP2-EREBP Transcription Factor Family AT2G28550 61.564 4.41e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca04g00723 AP2 3.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00723 K09284 - gmx:100812898 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00723 04 7216991 7221212 Cca04g00723 04 7216991 7221212 ECH
Cca10g00482 10 4992733 4996232 Cca04g00723 04 7216991 7221212 ECH
Cca10g00482 10 4992733 4996232 Cca04g00723 04 7216991 7221212 PCT