Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00717 ATGAACAATAATGTTGGGGAAGGGAGAAGAGGTTTGGCAGAACAAAATCACATGTTTATTGACGAAAAGAGTCTGAACAATGGAGGGGTAGGCTCTGGATCATCAAATGAAGGTGACACAAGATTTAATAAGGTGGCTGAAGATGGAAACAATGGGTTGAGGGGTCTTATTCAAACCCATGGGAGTTTGCAGACTTCACAACCACCACCTCAAGGGCCAGTCGTATGCTGGGAGAGATTTCTTCCTGTGAGATCAATAAAAGTTTTGCTGGTGGAAGATGACGATTCAACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTGGTTATGAAGTTACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTAGAAGATCCAGGAAATCACATTGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACAAGTCTCTGAAGAATATTCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCAAAAGGCGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGCAACCCACACCAGAAAATCTGCAAAGTCAAGAAGTAATGATGCATCTGAAAACAATAGTGACAGCAGTGATGAGAATGACTATGGAAGCAGAGGCTTGAGCATTCGAGACGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTGGTTCAAGTTGGCAGTCCTCATCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCTGATAATAGCACGTATGCCCAAGTGATGCATACGAAGACTGAAAAAGTTAGTAGTAGATGGGTGCCCACGACAGAAAAAGAGTGCCATGAACTTATTGATCATCTTGTTACCTTCTTTCCAGATGATGTTGCAATGGGTAAGGACTTGGCTATGGGAATATCTTTGAATATGCAACTAGAACATCCACCTGAGGAACTGTCTAGCAATCCAACGGGTAAAGGGGAAAATAAGATGTCCGATGTAGATGATAAAGGACAGAACAATGTCTGTGAAAAAGGACTACTGAAATACAATGGCGATAAAACCAGGACACAGGAAAATCAGGCTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACCCCAAATGGGTTTTCCGGATTCTCAGAAACAAAAGTAAACTGTTGCTCCAAACAGCATCCATCCCTTGAGCTGACTTTGAAAAGGCTGGGAGATGTGAGAGATGCTAATAATGTCACAGGTGAAGAATGCAATATCTTGAGACATTCAGATCTGTCAGCATTCTCAAAATATAATACTGCTACTTCTGCTAACCAGGCTCGAACCGGAAATGTTGGAAGCTGTTACCTGCTAGACAATGGCTCAGCTGCACCAAATACAGAGGCAATACACAACTTTCCATCTCATTCAAATGGCACTCCTCCAAATCAACAATCTAATGGGAGCAACAACATCAACGACATGGCCTCCACTAATACATATCTTGGCACCAAGCCCGATGCTTTTGACAAGAAGCCAGAGTTTGTTAGAGGGATTGGCTCATTTAATTCTTCTGCCCGGGAAGAATATACAGAATTCATTAAAGGACAAGTGGGAGGCTCCGAACATGGATTCCAAGTTGAGCACGCTCACTATCAGCTTCATTATAATCACATTTCCCAAAAGGCTGCAGTAGATCTCCGAACAGATCATGATCTCTTACTGAAAAGTGCAACCAAAGCTGCTCAGCAATGTGTATCATCAAATGCATTTGGGGGGACAGCAGAAAGTAATGCTGCAAACTATGCTGTAGATGGAAATGCAGTGGACAGTGATCATGGGAGCAATGGACAAGACGGAAGCAACACCTTGACAATCAGGACTGGAAATGTGGAAAATGGCAATGTGGCTGCTGGGAGCATTGGAGCTGGTGGCATGGATTGGAAAAACATTGGGAATGGGGCAGATGAAGGACGACTTGCATTGAGAGAGGCCGCCTTGACCAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAAAGGGTTCGATATCACAGCAGGAAAAAACTGGCAGAACAGCGACCCCGTATTAGGGGACAATTTGTCAGACGAATAGTGTCCGAAGCCAAAGAAGAAAAAGATCAACAAAGTGACAACCTGATGTCTGGGGATAATTCTAGCGACCTTCCACAATAA 2316 0.4309 MNNNVGEGRRGLAEQNHMFIDEKSLNNGGVGSGSSNEGDTRFNKVAEDGNNGLRGLIQTHGSLQTSQPPPQGPVVCWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCGYEVTAVSNGLQAWKVLEDPGNHIDLVLTEVAMPILSGIGLLCKIMSHKSLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATHTRKSAKSRSNDASENNSDSSDENDYGSRGLSIRDGSDNGSGTQSSWTKCLVQVGSPHPVSPHKQLVDAPDNSTYAQVMHTKTEKVSSRWVPTTEKECHELIDHLVTFFPDDVAMGKDLAMGISLNMQLEHPPEELSSNPTGKGENKMSDVDDKGQNNVCEKGLLKYNGDKTRTQENQAMNVIDVTDSNSPQAESRDLNTPNGFSGFSETKVNCCSKQHPSLELTLKRLGDVRDANNVTGEECNILRHSDLSAFSKYNTATSANQARTGNVGSCYLLDNGSAAPNTEAIHNFPSHSNGTPPNQQSNGSNNINDMASTNTYLGTKPDAFDKKPEFVRGIGSFNSSAREEYTEFIKGQVGGSEHGFQVEHAHYQLHYNHISQKAAVDLRTDHDLLLKSATKAAQQCVSSNAFGGTAESNAANYAVDGNAVDSDHGSNGQDGSNTLTIRTGNVENGNVAAGSIGAGGMDWKNIGNGADEGRLALREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVSEAKEEKDQQSDNLMSGDNSSDLPQ 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00717 771 Pfam CCT motif 702 743 IPR010402 GO:0005515
Cca04g00717 771 MobiDBLite consensus disorder prediction 513 533 - -
Cca04g00717 771 ProSiteProfiles Response regulatory domain profile. 87 205 IPR001789 GO:0000160
Cca04g00717 771 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 737 IPR045279 GO:0009736
Cca04g00717 771 CDD psREC_PRR 88 191 - -
Cca04g00717 771 ProSiteProfiles CCT domain profile. 702 744 IPR010402 GO:0005515
Cca04g00717 771 MobiDBLite consensus disorder prediction 351 365 - -
Cca04g00717 771 Pfam Response regulator receiver domain 88 199 IPR001789 GO:0000160
Cca04g00717 771 MobiDBLite consensus disorder prediction 209 266 - -
Cca04g00717 771 MobiDBLite consensus disorder prediction 231 247 - -
Cca04g00717 771 SMART REC_2 86 201 IPR001789 GO:0000160
Cca04g00717 771 MobiDBLite consensus disorder prediction 747 771 - -
Cca04g00717 771 MobiDBLite consensus disorder prediction 351 377 - -
Cca04g00717 771 MobiDBLite consensus disorder prediction 21 41 - -
Cca04g00717 771 Gene3D - 85 251 - -
Cca04g00717 771 SUPERFAMILY CheY-like 84 210 IPR011006 -
Cca04g00717 771 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 28 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00717 Cca-Chr4 7089412 7104418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00717 33 291 Response Regulator Gene Family AT5G60100 63.118 3.78e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Cca04g00717 Response_reg 2.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00717 K12129 - gmx:100785796 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00717 04 7089412 7104418 Cca04g00717 04 7089412 7104418 ECH