Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00716 ATGGGTTGCTTTTGTTGCCTTGGGGCATCGAGGAAACAATTGGTAACCGAAGAAGACTATAGCGACACCCCGAACAACGCGAAACCCTCCAACTTCACTGCCCCAGATAGCGTTAAGGTTGATTTCAAAGTGAATGGGAATAAAGAAGATGATTCTAAAGGCGATCAACTTGCTCTGGACGTGAAGAATTTAAATTTGAGAGAGGGGGTTTCTGAGGATGGAAAAGATAATGGCAACCGGGCACAGACATTCAGTTTTAACGAACTTGAAACTGCTACAGGAAACTTTAGGTTGGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACCTGGATAGAATAGACCAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGGATTCGGGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATCTTGTAAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAGTACATGCCATTAGGATCTCTGGAGAACCATTTGCTTGATCTTCGGCCTGGCGTAAAACCTCTTGATTGGAACACAAGAATGAAAATAGCAGCTGGCGCAGCTAGGGGTTTGGAGTACTTGCATGATAAAATGAAGCCTCCTGTAATATATCGTGACTTGAAATGCTCTAACATTTTGTTAGGAGAGGGATATCATCCTAAGTTGTCTGATTTCGGCTTGGCAAAAGTAGGCCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATATGGGTATTGTGCCCCAGATTATGCAATGACAGGTCAGTTGACATTCAAGTCAGATATTTACAGTTTCGGGGTTGTTCTTTTGGAGCTCATTACAGGCCGGAAAGCTATTGACCATACAAAACCTCCCAAAGAACAAAATCTAGTTGCATGGGCAAGACCCTTGTTCAGAGACAGGAAAAAATTTTCCCAAATGGTTGATCCATTACTTGAAGGGCAATATCCCATGAGAGGCTTATACCAAGCTCTGGCCATTGCTGCTATGTGTGTTCAAGAGCAACCTAATATGCGACCTGTTATAGTTGATGTGGTCACAGCTCTAAATTACCTTGCTTCTCAGAAGTATGATCCCCTAAATCATTCAGCTCAAAGCTCTAGAAGAGGTTCACCTTCTCAGATATTGCAAAGGGATGATGAGAATAAGGGGCATATTTTAAGCATGGAGCATGTGACAACAGACAGGTCTTAA 1257 0.4288 MGCFCCLGASRKQLVTEEDYSDTPNNAKPSNFTAPDSVKVDFKVNGNKEDDSKGDQLALDVKNLNLREGVSEDGKDNGNRAQTFSFNELETATGNFRLDCFLGEGGFGKVYKGHLDRIDQVVAIKQLDPNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENHLLDLRPGVKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKPPKEQNLVAWARPLFRDRKKFSQMVDPLLEGQYPMRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPLNHSAQSSRRGSPSQILQRDDENKGHILSMEHVTTDRS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00716 418 CDD STKc_IRAK 102 371 - -
Cca04g00716 418 PANTHER OS07G0668900 PROTEIN 1 402 - -
Cca04g00716 418 MobiDBLite consensus disorder prediction 395 418 - -
Cca04g00716 418 SMART serkin_6 96 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00716 418 Pfam Protein tyrosine and serine/threonine kinase 99 368 IPR001245 GO:0004672|GO:0006468
Cca04g00716 418 MobiDBLite consensus disorder prediction 381 418 - -
Cca04g00716 418 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 402 - -
Cca04g00716 418 Gene3D Phosphorylase Kinase; domain 1 67 172 - -
Cca04g00716 418 ProSiteProfiles Protein kinase domain profile. 96 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00716 418 Gene3D Transferase(Phosphotransferase) domain 1 173 392 - -
Cca04g00716 418 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Cca04g00716 418 SUPERFAMILY Protein kinase-like (PK-like) 82 385 IPR011009 -
Cca04g00716 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00716 Cca-Chr4 7071883 7076580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00716 1 375 Glycoside Hydrolase AT3G07070 55.673 1.14e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca04g00716 PK_Tyr_Ser-Thr 7.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00716 - - gmx:100811821 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00716 04 7071883 7076580 Cca04g00716 04 7071883 7076580 ECH
Cca10g00477 10 4903116 4906937 Cca04g00716 04 7071883 7076580 ECH
Cca10g00477 10 4903116 4906937 Cca04g00716 04 7071883 7076580 PCT