Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00713 atgtgtgtgtgtatgaatgaatgGAAGCAGAGAGTGAGAGTGATGGAGGCATTTCCAAGAGACCAACGTGGCTCGCTCGAAGTGTTCAACCCATCGTCTTCTTACTCCGCCGAGAAGCCGGTGGCGTCGCCGTTGCGCTCTCAATCCACGTGGAAGACGTGGATAGACTCACGCGCCGAGGACCCGCCGGAGGAGCAGCAGCGCGGTTCCGACGAGGTCACCGCCACGTCATGGATGGCGCTGAAGGACTCCGCTCCGCCCACGCTGGCGGCGGTGCTCGGGGAGCCTCTGGCGGCTGCGGCGGCGGGGGAGGAGGCCGGGAGCGCGGCGAAGCGCGCCGCGGAGTGGGGGCTGGTGCTGAAGACGGACACGGAGACGGGGAGGCCGCAGGGAGTGGCGGCGGCGCGGAGCTCCGGCGGGGAGGAGGCGAGCGGGAAGGGGTCTCGGAGGGACTCCGGGAACTCGGTGAGAAGCTCCGGCGAGTCTTCCGACGAGGGAAGGGAGCAGCGCGGCGGAATACCGCGGGTGTCGGAGGACCTGAGGGAGGCGTTGTCGGCGTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCTAGTGCCGGGTTTTTCAAGATGACGGGTTATACGTCCAAGGAGGTCATTGGGAGAAACTGTCGGTTTATGCAGGGCGCAGACACGGATCCGGATGATGTGGCAAAGATAAGGGAAGCCTTAGAAAGAGGGTCTACTTATTGCGGAAGGTTACTTAACTACAAGAAGGATGGGACTCCCTTTTGGAACCTTCTCACTATTGCCCCTATCAAAGATCACCATGGCAATCTCCTCAAATTTATCGGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGACGAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCTTTGATTCGATATGATGCTCGTCAGAAAGAGAAGGCAAATAGTTCAGTATCTGAGTTGGTGTTGGCTGTAAGAAGGCCTCGGGCACTGAGTGAATCAGGAGGTCGTCCCTTGATCAGAAAGTCAGCATCCGGTGATGATGCACAAGAGAAACCAGAAAAGTCATCTAGGAGAAAATCTGAGAGTGTGGCTTCTTTTAGACGAAAATCACATGCGGGAGACAGAAGTTCAATGGAGAGAATCGCTGAGATACCTGAAAAGAAACACAAGAACTCTCGTCGTCGTTCTTTCATGGGGTTCATCAGGAAAAGTCAATCTAACTTTGGAAGCTTTAATGATGAAGCGATTGTTGAGGACAGCTCTGTGAGTAGtgatgatgatgatgatgaAAGGCCTGATAGTTTTGATGGAAAAGTACATAAGAAGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACTCTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTACCCGACAACCCCATTATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAGTACAGTCGTGAAGAAATCTTGGGAAGAAACTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACGGTGAGAAAAATTAGAGAGGCTATTGACAATCAAACTGATGTCACTGTGCAACTCATTAATTATACAAAGAGTGGTAAAAAGTTTTGGAACTTGTTTCATTTGCAACCTATGCGTGACCAGAAGGGAGAGGTACAATATTTTATTGGAGTTCAACTTGATGGTAGTCAACATGTGGAGCCTCTTCACAATGGCATTGCAGAAGATACTGCAAAAGAGGGAGAACAATTGGTAAAGGAAACAGCTGAAAATGTTGATGATGCACTGAGAGAACTTCCAGATGCTAATATGAAACCAGAAGATTTATGGATGAATCATTCAAGAGTGGTTCACCCCAAACCTCATAGAAGGGATGAAGCTGCTTGGAGGGCTATTAAGAAGATTTTAGATAGTGGAGAGCAAATAGGCTTGAATCATTTTAGACCAGTTAAACCTTTGGGATCAGGAGATACCGGCAGTGTCTATCTGGTGGAGCTATGTGAAACTGGTCAATATTTTGCCATGAAGGCTATGGAAAAAGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAAAGAGAGATCCTCGACATGTTAGACCATCCTTTTCTTCCTGCATTATATGCTTCTTTTCAGACCAAGACACATGTTTGTTTGATAACTGATTATTGTTCTGGTGGAGAACTATTCCTTCTTCTTGACCGACAACCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGGTTTTATGCCGCTGAAGTAGTTGTTGCGTTGGAGTATCTTCATTACCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTATTACTCCAGAGTAGTGGACACGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACGTCTTGCAAACCACAGCTTCTAGTTCCAGCTATAAATGAAAAGAAGAAAGCACAGAAAAGCCAACATGCTCCAATATTTATGGCTGAACCTATGAGAGCATCAAATTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATACAAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTGTATGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGACTAGACAAAGAACATTTACAAATATTCTCCACAAGAACATTAAATTTCCCAAAAATAAACAGGTAAGTTTTAGTGCAAAGCAGTTAATGTACCGGTTGTTGAATAGAGACCCCAAAAGCAGATTGGGTTCAAGAGAGGGAGCAAACGAAATTAAGAACCATCCATTCTTTCGGGGTGTAAATTGGGCCCTAGTTCGTTGCACGAAACCTCCTGAGTTGGATGCTCCTCTTGAGTCAACCGAAGGAGAAAACGAAGCCAACTATGAAGATCACGTGCAAGAGGAGATGAACGTCTTCTAA 2964 0.4649 MCVCMNEWKQRVRVMEAFPRDQRGSLEVFNPSSSYSAEKPVASPLRSQSTWKTWIDSRAEDPPEEQQRGSDEVTATSWMALKDSAPPTLAAVLGEPLAAAAAGEEAGSAAKRAAEWGLVLKTDTETGRPQGVAAARSSGGEEASGKGSRRDSGNSVRSSGESSDEGREQRGGIPRVSEDLREALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQGADTDPDDVAKIREALERGSTYCGRLLNYKKDGTPFWNLLTIAPIKDHHGNLLKFIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDARQKEKANSSVSELVLAVRRPRALSESGGRPLIRKSASGDDAQEKPEKSSRRKSESVASFRRKSHAGDRSSMERIAEIPEKKHKNSRRRSFMGFIRKSQSNFGSFNDEAIVEDSSVSSDDDDDERPDSFDGKVHKKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNGIAEDTAKEGEQLVKETAENVDDALRELPDANMKPEDLWMNHSRVVHPKPHRRDEAAWRAIKKILDSGEQIGLNHFRPVKPLGSGDTGSVYLVELCETGQYFAMKAMEKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFLLLDRQPAKVLREDAVRFYAAEVVVALEYLHYQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPAINEKKKAQKSQHAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKNIKFPKNKQVSFSAKQLMYRLLNRDPKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLESTEGENEANYEDHVQEEMNVF 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00713 987 ProSiteProfiles PAS repeat profile. 176 248 IPR000014 -
Cca04g00713 987 Pfam Protein kinase domain 661 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00713 987 PANTHER FLIPPASE KINASE 1-RELATED 123 981 - -
Cca04g00713 987 SUPERFAMILY PYP-like sensor domain (PAS domain) 473 572 IPR035965 -
Cca04g00713 987 ProSiteProfiles Protein kinase domain profile. 658 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00713 987 TIGRFAM sensory_box: PAS domain S-box protein 482 572 IPR000014 -
Cca04g00713 987 TIGRFAM sensory_box: PAS domain S-box protein 202 297 IPR000014 -
Cca04g00713 987 Gene3D PAS domain 446 610 - -
Cca04g00713 987 Pfam PAS domain 197 293 IPR000014 -
Cca04g00713 987 Pfam PAS domain 480 572 IPR000014 -
Cca04g00713 987 Gene3D Transferase(Phosphotransferase) domain 1 742 961 - -
Cca04g00713 987 Gene3D PAS domain 190 344 - -
Cca04g00713 987 Coils Coil 589 609 - -
Cca04g00713 987 PANTHER PHOTOTROPIN-1 123 981 - -
Cca04g00713 987 Gene3D Phosphorylase Kinase; domain 1 657 741 - -
Cca04g00713 987 SMART pac_2 534 576 IPR001610 -
Cca04g00713 987 SMART pac_2 253 295 IPR001610 -
Cca04g00713 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Cca04g00713 987 CDD PAS 472 572 IPR000014 -
Cca04g00713 987 SMART pas_2 459 528 IPR000014 -
Cca04g00713 987 SMART pas_2 178 247 IPR000014 -
Cca04g00713 987 ProSiteProfiles PAC domain profile. 531 585 IPR000700 -
Cca04g00713 987 SMART serkin_6 658 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00713 987 ProSitePatterns Protein kinases ATP-binding region signature. 664 687 IPR017441 GO:0005524
Cca04g00713 987 ProSiteProfiles PAC domain profile. 250 304 IPR000700 -
Cca04g00713 987 MobiDBLite consensus disorder prediction 423 453 - -
Cca04g00713 987 ProSiteProfiles PAS repeat profile. 457 530 IPR000014 -
Cca04g00713 987 SUPERFAMILY Protein kinase-like (PK-like) 643 964 IPR011009 -
Cca04g00713 987 MobiDBLite consensus disorder prediction 121 173 - -
Cca04g00713 987 CDD STKc_phototropin_like 657 964 - -
Cca04g00713 987 MobiDBLite consensus disorder prediction 342 406 - -
Cca04g00713 987 CDD PAS 203 292 IPR000014 -
Cca04g00713 987 SUPERFAMILY PYP-like sensor domain (PAS domain) 197 289 IPR035965 -
Cca04g00713 987 MobiDBLite consensus disorder prediction 354 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00713 Cca-Chr4 7044621 7060008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00713 17 987 AGC Kinase Gene Family AT3G45780 69.378 0.0 1328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca04g00713 Pkinase 6.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00713 K20715 - gmx:100804524 1705.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00713 04 7044621 7060008 Cca04g00713 04 7044621 7060008 ECH
Cca10g00474 10 4868260 4886385 Cca04g00713 04 7044621 7060008 PCT