Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00709 ATGTACACACACAACCCCACCGCCCCCCCACGCGCCGCCGACCCCCTCCTGTCGCCGCCAATGCAGTACGGCGGCGCTCATACCCCGGCGGCGGAGTGGACGTGGCAGGTGAACTCGGAGGCGAGCTGGAATTGTAACACGTGCAACAGTTGCAGCAGCGGCAGCGGGTGCACGAGTTACATGGGATCGCCGAGTTCGCTGGCGAGTTACGAGAGTCAACGAGCGTGTTTGATGCAGAGAAGCGTTAGCAGCCACTCGCTGCAGAAGAATTCAAACACACTCTTTTCTTCTCCTCTCTTCGCTCAGTTGCTTCACTCTGATAACGCTCCCGTTAGAAGAGCTTGCAGTACCGGTGATCTTCAGAGATTCAATGGAATGCAACATTATCTTCATTCTCATTCTGATAGCCCATTGTCAAGTGAAAGTAGTTTGATCATAGAAGAAATGAGTAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAAAGATATAGAAGCAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGTATGCTTGCAGAAAGACATTGGCAGATAGTAGGCCACGTATCAGAGGACGATTTGCAAGGAATGATGAAATTGCAATGAACCCCCCAGTTCAGTGGAGCCACATGGCTAATGGAGAGGAGGAGGATGAAGAAGAAGAGAATTGGGCCAATTTCTTTGATTCCTTAGTTCCTGAAAATCTTCCTCAAGACCCTCAAGGCAGTTCCTCCTTTGAATTCCGCAGGCGGCAGAATTCCAAAGTCCAAACTGGCAAAGGCGCCAAAGCATCCACGTCATCGATCCGCACGCAATCCCTCGTCGAATCTCAACCGCACATTAAAAATCCATCAACGCTCCAAAACGCTTCCCCGAAACCCCTCTCACGGATCCACACACTAGATCACCACACATATAAATACAAACAAAATCTCCCTTCCACTCATCAGAAAGCGCACACCTTATCGTTCCTTCTCCTCTCGGTTGCGGTTGTTCTTGTTAGCGGTTGA 1026 0.4981 MYTHNPTAPPRAADPLLSPPMQYGGAHTPAAEWTWQVNSEASWNCNTCNSCSSGSGCTSYMGSPSSLASYESQRACLMQRSVSSHSLQKNSNTLFSSPLFAQLLHSDNAPVRRACSTGDLQRFNGMQHYLHSHSDSPLSSESSLIIEEMSRTSPYSPEEKKVRIERYRSKRNQRNFGKKIKYACRKTLADSRPRIRGRFARNDEIAMNPPVQWSHMANGEEEDEEEENWANFFDSLVPENLPQDPQGSSSFEFRRRQNSKVQTGKGAKASTSSIRTQSLVESQPHIKNPSTLQNASPKPLSRIHTLDHHTYKYKQNLPSTHQKAHTLSFLLLSVAVVLVSG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00709 341 ProSiteProfiles CCT domain profile. 160 202 IPR010402 GO:0005515
Cca04g00709 341 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 43 252 IPR045281 GO:0009909
Cca04g00709 341 MobiDBLite consensus disorder prediction 241 299 - -
Cca04g00709 341 PANTHER CCT MOTIF PROTEIN 43 252 - -
Cca04g00709 341 Pfam CCT motif 162 202 IPR010402 GO:0005515
Cca04g00709 341 MobiDBLite consensus disorder prediction 236 299 - -
Cca04g00709 341 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00709 Cca-Chr4 6983513 6993444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00709 156 205 C2C2-CO-like Transcription Factor Family AT5G15850 48.000 1.46e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca04g00709 CCT 1.7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00709 - - gmx:102667610 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00709 04 6983513 6993444 Cca04g00709 04 6983513 6993444 ECH
Cca10g00468 10 4799386 4801766 Cca04g00709 04 6983513 6993444 PCT