Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00698 ATGGCGAGAATCAAGGTTTACGAGCTGAGGAACAAGACGAAAGCAGAGCTTCTGAACCAATTGAAGGATTTGAAAGCCGAACTCGCTCTTCTCCGTGTCGCTAAGGTCACTGGTGGAGCCCCAAACAAGCTCTCGAAGATAAAAGTGGTTCGGCTTTCGATAGCGCAAGTGCTGACGGTGATTTCGCAGAAGCAAAAAGCAGCGTTGAGAGAAGCTTACAAGAATAAGAAGTACTTGCCTTTGGATCTGCGTCCCAAGAAGACCAGAGCTATCAGAAGACGCCTCACAAAGCACCAGGAATCATTGAAGACAGAGCGTGAGAAGAAGAAAGAAATGTACTTCCCAATTAGAAAATATGCATTAAAGGTGTAA 372 0.4543 MARIKVYELRNKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQESLKTEREKKKEMYFPIRKYALKV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00698 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 123 - -
Cca04g00698 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Cca04g00698 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Cca04g00698 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Cca04g00698 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Cca04g00698 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Cca04g00698 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Cca04g00698 123 CDD Ribosomal_L29_HIP 8 64 - -
Cca04g00698 123 Coils Coil 7 34 - -
Cca04g00698 123 Gene3D - 78 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00698 Cca-Chr4 6856175 6858326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00698 1 123 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 89.431 1.97e-73 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00698 K02918 - gmx:100778013 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00698 04 6856175 6858326 Cca04g00698 04 6856175 6858326 ECH