Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00687 ATGGCTCCGGCTAAAGTTGATAGTTCTAAGAAGGGTGATCCAAAGGCACAGGCCTTGAAAACTGCTAAGGCAGTTAAGTCTGGTGCTACCTTTAAGAAGAAGGCAAAGAAGATCCGAACTTCTGTCACTTTCCACAGGCCTAAGACATTGAAGAAGGATAGGAACCCCAAGTACCCTCGCATCAGTGCACCACCAAGGAACAAGCTTGATCATTATCAGATTTTGAAGTTCCCTCTCACCACTGAATCTGCTATGAAGAAGATTGAGGACAACAACACTTTGGTTTTTATTGTTGACCTGCGTGCTGACAAGAAGAAGATCAAGGATGCAGTGAAGAAAATGTACGATATCCAGGCGAAGAAAGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCATATGTTAGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATCATCTAA 465 0.4409 MAPAKVDSSKKGDPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00687 154 MobiDBLite consensus disorder prediction 1 24 - -
Cca04g00687 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cca04g00687 154 Gene3D - 35 154 IPR012677 -
Cca04g00687 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 -
Cca04g00687 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cca04g00687 154 Pfam Ribosomal protein L23, N-terminal domain 15 64 IPR005633 -
Cca04g00687 154 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 154 - -
Cca04g00687 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Cca04g00687 154 TIGRFAM uL23_arch: ribosomal protein uL23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Cca04g00687 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cca04g00687 154 MobiDBLite consensus disorder prediction 43 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00687 Cca-Chr4 6719752 6721794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00687 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 9.23e-71 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00687 K02893 - jre:109021970 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00687 04 6719752 6721794 Cca04g00687 04 6719752 6721794 ECH
Cca10g00448 10 4630309 4631693 Cca04g00687 04 6719752 6721794 ECH
Cca10g00448 10 4630309 4631693 Cca04g00687 04 6719752 6721794 PCT