Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00686 ATGTCTTCTGCTTCTGGGAAATCTGATGACCCTGGGAATTGGAAGCTAGAGGATGTTATATCAATTGTTGTAGTGTGCGTTATCTTTATCACACTGGGTGATTGCTTCGGCTTATTTAAGCGTCTGATGTGCGGAATTTGCAGTGGCAGAAACCAGGGTCAAAGGAGACTTCTAGATGAGTCCATTGCCGATGACCCTTCTGTGCAGCTTCAAAGCCGTGGATTGGATTTCTCTGTGGTGCAGTCTCTTCCAACGTCTCAGTTCAAGAAAAATGAGGGAGAACAAGACAAGACAGTTGGTGTTGACTGTGTTATTTGCCTTGGAGAGTTTGAGGAAGGGGAGTGGCTGAAACATCTTCCACACTGTGGCCACGGCTTCCATGTTTTATGCATTGACACATGGTTTCAGTCTCATTCAAATTGTCCCCTTTGTAGATCATTTGTCCATCATCACCTCCTAGAGTGTTCGCTTTCTCCCCACACATTGCTAGAGTCTTTAAGGGGAGAAGATTTTACCCAAGAAAGGGTGAATCAACCCGGTGGATCTGAAAACCTGCCTGTTACACGATATTAG 573 0.452 MSSASGKSDDPGNWKLEDVISIVVVCVIFITLGDCFGLFKRLMCGICSGRNQGQRRLLDESIADDPSVQLQSRGLDFSVVQSLPTSQFKKNEGEQDKTVGVDCVICLGEFEEGEWLKHLPHCGHGFHVLCIDTWFQSHSNCPLCRSFVHHHLLECSLSPHTLLESLRGEDFTQERVNQPGGSENLPVTRY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00686 190 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cca04g00686 190 PANTHER RING-H2 FINGER PROTEIN ATL2 16 156 - -
Cca04g00686 190 SUPERFAMILY RING/U-box 87 150 - -
Cca04g00686 190 SMART ring_2 103 144 IPR001841 -
Cca04g00686 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 150 IPR013083 -
Cca04g00686 190 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 16 156 IPR044675 -
Cca04g00686 190 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00686 Cca-Chr4 6718070 6719308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00686 22 148 C3H Transcription Factor Family AT1G20823 37.500 4.50e-23 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00686 - - gmx:121172630 271.937