Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00684 ATGCCGATTTCGAGAATTTCCATTGGAAACCCTTCAGAGTTGGGGCAAGCTGATGCACTTAAGGCTGCTCTAGCTGAGTTCATCTCAATGCTGATCTTTGTCTTTGCAGGAGAAGGCTCTGGCATGGCATATAACAAACTCACAAACAATGGCTCAGCAACACCAGCTGGGGTGGTGGCAGCATCACTATCTCATTCATTTGCTCTTTTTGTCGCGGTCTCTGTTGGTGCTAACATCTCAGGTGGGCATGTTAACCCTGCTGTCACATTTGGTGCCTTTATTGGAGGCCACATAACCCTCCTCAGAGGCATTTTGTACTGGATTGCTCAGTTGCTCGGCTCCGTAGTGGCTTGCTTGCTGCTTAAATTTGCCACTGGTGGATTGGAAACATCTGCATTTGCATTGTCTTCTGGAGTGGGAGCGGCAAATGCACTTGTCTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACAGTGTATGCAACTGCAGTGGACCCAAAGAAGGGTGACCTTGGGATAATTGCTCCGATTGCAATTGGTTTCATTGTGGGTGCCAACATCTTGGCAGGTGGTGCCTTTGATGGTGCATCCATGAACCCAGCAGTTTCTTTTGGACCTGCTGTTGTTAGTGGGACATGGGCCAACCACTGGGTCTACTGGGCCGGCCCATTAATTGGCTCCGCTATTGCTGCTGTTGTGTACGAGATTTTCTTCATCACCCCAAGCTCTTATGAACAGCTACCCGTCACAGATTATTAG 759 0.4822 MPISRISIGNPSELGQADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGSATPAGVVAASLSHSFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLLRGILYWIAQLLGSVVACLLLKFATGGLETSAFALSSGVGAANALVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSGTWANHWVYWAGPLIGSAIAAVVYEIFFITPSSYEQLPVTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00684 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cca04g00684 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Cca04g00684 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Cca04g00684 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Cca04g00684 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00684 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00684 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00684 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00684 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00684 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00684 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00684 252 SUPERFAMILY Aquaporin-like 18 243 IPR023271 -
Cca04g00684 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00684 Cca-Chr4 6698866 6699845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00684 1 252 Major Intrinsic Protein MIP AT2G36830 78.571 2.64e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00684 K09873 - gmx:100777419 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00684 04 6698866 6699845 Cca04g00684 04 6698866 6699845 ECH
Cca10g00446 10 4595648 4597014 Cca04g00684 04 6698866 6699845 ECH
Cca10g00446 10 4595648 4597014 Cca04g00684 04 6698866 6699845 PCT