Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00682 ATGGAGCTTCATTCCAAATGGGGAAATAGATGGTCAAGGATTGCTCGCAAGTTACCGGGGCGCACGGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGGAAGAAGAAGGCACAAGAGAAAAAACGTGCTGCATCATTAGCATCACGTGTGTCTTCTAGTTGTCAATCTTCACTGTCCTCAAACAACCATGTTGTGGATTCACATGCTTCCAAGGAGGCTGGAGAAGAGAGTTTTTATGACACAGGTGGACATGATCATGATGACATGATGGGGTTAATTGGACTTGGTGTTGGAGAAGACCAAGTTGGTGAAAAGGGGTACACTATGGATGATATATGGAATGATATTGTTGAGTCAGAAGAGAACATTTATAATCTGCAACCTGTGTATGATGGACACAGTGAAGAGGGTTGCAACTTCTCTTGTCCACCTCCAATGCCTTCTCCATCATGGGATGAGTACAATTCTCACCCTCTTTGGGTGATGGATGAGGAAGAAAGTAACAAGATGTTATTCCCTGACCAATATTTTCCATGCTATGACCAAGGAAATGCATATTTCTAA 570 0.4246 MELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKAQEKKRAASLASRVSSSCQSSLSSNNHVVDSHASKEAGEESFYDTGGHDHDDMMGLIGLGVGEDQVGEKGYTMDDIWNDIVESEENIYNLQPVYDGHSEEGCNFSCPPPMPSPSWDEYNSHPLWVMDEEESNKMLFPDQYFPCYDQGNAYF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00682 189 Gene3D - 1 64 - -
Cca04g00682 189 MobiDBLite consensus disorder prediction 70 85 - -
Cca04g00682 189 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 1 182 - -
Cca04g00682 189 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
Cca04g00682 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Cca04g00682 189 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
Cca04g00682 189 MobiDBLite consensus disorder prediction 40 85 - -
Cca04g00682 189 CDD SANT 2 34 IPR001005 -
Cca04g00682 189 Pfam Myb-like DNA-binding domain 2 33 IPR001005 -
Cca04g00682 189 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 182 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca04g00682 189 SMART sant 2 36 IPR001005 -
Cca04g00682 189 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00682 Cca-Chr4 6686077 6687970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00682 1 187 MYB Transcription Factor Family AT3G46130 46.354 2.28e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca04g00682 Myb_DNA-binding 4.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00682 K09422 - gmx:100776886 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00682 04 6686077 6687970 Cca04g00682 04 6686077 6687970 ECH
Cca04g00682 04 6686077 6687970 Cca10g00445 10 4589236 4590762 PCT