Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00680 ATGTCTTTGCAAAACAAGGGATTTTGGGTGGTAAAGGGTTCTGGACACATTAATGACAGAGAAACAGTATTTGATAATCCTTCCAAAATTGAACCAAAACGACCTCATCAATGGTTTGTTGATGCCGCTGAAGTAGATTTTTTTCCAAGCAAGAAACAAGCTGTAGAAGATGCAAATGAAAAATCTAGTCCTGGATTTTCAAATGTAAATTTTCCTCCCTGGGAGAATCCCAATTTTCATCCAGTCCCAAACCAATTTATTGGCCGGTTATTTGGGTCTGAAACCAGGCCTGTCAATTTCCCCGAAAAAAATACTTATGTTCTGGCTGATGATTCTAATGCAAGATTAAAGATGATCACCAACCAATATGGAGATGATGCATCTTTTGGCTTGTCTATATCTCATTCTATTGAAGATTCTGAAGCATGCGTAAATTTTGGTAGAATAAAAAAAGACAAAGTAAATCAGGTTAAGGAAGATGATGTACAGGCTACTGAGGGACATAATTTTAGTAAGCAGAGTAAAGGTGATCTACATCAGGCCTATAACAGGGAAGTTGAGACAAGGTCTGCATCAATAGGGCAAGCGTTTGACAAGGATGGTAATGCCACTTTTATGGGACTCACCTACAGCAGTGGGGATACACATGTTAGACCATTTAGTGCCCCCTTTATCAAAGATGACTCAATCGTTTCGATTAGTGAATCCTATAATAAAGAGGACACTAGTATAATTTCTTTTGGTGGGTTCCCAGATGAACGGGATATTATCTCTGTGGGTAGGCCTGCTGCAGAGTATGATCAATTATATAATCAATCTTCAATTCATGTGTCAACAACAACCCATGAGAAAGAGTTGGATGGGTCGAGTTCTGATGCAGTTCCAAGTACTCTTCAGGCAGCAAAAGTAAAGTCTGAAACTGTGTCCAAGAATAAACAAGAGGTCAAAACAGGAAGGAAAGAAGCTCCAAACAGCTTCCCTTCTAATGTCAGGAGCTTGATATCTACTGGTATGCTTGATGGTGTTCCTGTAAAGTATATCTCAGTGGCACGTGAGGAACTTCGTGGAATTATTAAAGGCTCTGGCTATCTTTGTGGGTGTCAGTCATGCAACTATACCAAGGTTCTGAATGCTTACGAGTTCGAGAGACATGCTGGCTGTAAAACAAAACATCCGAACAATCACATCTATTTTGAGAATGGGAAAACCATTTATCAAATAGTACAGGAATTGAGGAGTACCCCCGAAAGTTTGTTGTTTGATACAATTCAAACAGTTTTTGGTTCACCAATTAATCAGAAAGCGTTTCGCAATTGGAAAGAATCATTTCAAGCAGCAACACGAGAGCTTCAACGCATTTATGGAAAGGAAGAACTTAACCTATAA 1386 0.3911 MSLQNKGFWVVKGSGHINDRETVFDNPSKIEPKRPHQWFVDAAEVDFFPSKKQAVEDANEKSSPGFSNVNFPPWENPNFHPVPNQFIGRLFGSETRPVNFPEKNTYVLADDSNARLKMITNQYGDDASFGLSISHSIEDSEACVNFGRIKKDKVNQVKEDDVQATEGHNFSKQSKGDLHQAYNREVETRSASIGQAFDKDGNATFMGLTYSSGDTHVRPFSAPFIKDDSIVSISESYNKEDTSIISFGGFPDERDIISVGRPAAEYDQLYNQSSIHVSTTTHEKELDGSSSDAVPSTLQAAKVKSETVSKNKQEVKTGRKEAPNSFPSNVRSLISTGMLDGVPVKYISVAREELRGIIKGSGYLCGCQSCNYTKVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTVFGSPINQKAFRNWKESFQAATRELQRIYGKEELNL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00680 461 Pfam Tify domain binding domain 356 411 IPR032308 -
Cca04g00680 461 PANTHER AUTOIMMUNE REGULATOR 1 461 - -
Cca04g00680 461 MobiDBLite consensus disorder prediction 301 326 - -
Cca04g00680 461 PANTHER DNA-BINDING PROTEIN 1 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00680 Cca-Chr4 6662126 6666347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00680 308 444 PHD Transcription Factor Family AT3G53680 52.899 1.06e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00680 - - gmx:100802229 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00680 04 6662126 6666347 Cca04g00680 04 6662126 6666347 ECH