Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00677 ATGCGTTTAACTAGCGCTTTTCTTCTCACCTTACCTCCATTTCTAAGTGTGCGTGTGCGTCATTACTCATCAACCAAGTTGTTTGTCGCAGGGCTTTCCTACGATACTAATGAACCGGTTCTCAGAGACGCCTTTGGACAACACGGTGAAATTATTGAAGTTAAAATAATATGTGATCATGTTACTGGAAAATCAAGAGGATATGGATTTGTACGGTTCGTTTCTGAAACTATAGCTGCTACAGCTCGCAAAGAAATGCACGCCCAGATATTAGATGGAAGACGCATTCGGGTGAGTTATGCGCACAAAGGGTAG 315 0.4254 MRLTSAFLLTLPPFLSVRVRHYSSTKLFVAGLSYDTNEPVLRDAFGQHGEIIEVKIICDHVTGKSRGYGFVRFVSETIAATARKEMHAQILDGRRIRVSYAHKG 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00677 104 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Cca04g00677 104 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 13 103 - -
Cca04g00677 104 Gene3D - 16 104 IPR012677 -
Cca04g00677 104 SUPERFAMILY RNA-binding domain, RBD 10 103 IPR035979 GO:0003676
Cca04g00677 104 SMART rrm1_1 26 99 IPR000504 GO:0003723
Cca04g00677 104 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 13 103 - -
Cca04g00677 104 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00677 Cca-Chr4 6631388 6633644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00677 19 98 Eukaryotic Initiation Factors Gene Family AT4G34110 28.750 1.14e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00677 K13195 - gmx:100306540 166.777