Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00676 ATGCGTTTAACTAGCGCTTTTCTTCTCACCTTACCTCCACTTCTAAGTGTGCGTGTGCGTGTGCGTCATTACTCATCAACCAAGTTGTTTGTAGCAGGGCTTTCCTACGATACCAATGAACCGGTTCTCAGAGACGCCTTTGGGCAACACGGTGAAATCATTGAAGTTAAAGTAATATGTGATCACGTGACTGGGAAATCAAGAGGGTATGGATTTGTGCAGTTCGTTTCTGAAACTACAGCTGCTACAACTCGCAAAGAAATGCACGCCCAGATATTAGATGGAAGACGCATTAGGGTGAGTTATGCGCACAAAGGGTAG 321 0.4517 MRLTSAFLLTLPPLLSVRVRVRHYSSTKLFVAGLSYDTNEPVLRDAFGQHGEIIEVKVICDHVTGKSRGYGFVQFVSETTAATTRKEMHAQILDGRRIRVSYAHKG 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00676 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Cca04g00676 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Cca04g00676 106 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 16 105 - -
Cca04g00676 106 SMART rrm1_1 28 101 IPR000504 GO:0003723
Cca04g00676 106 SUPERFAMILY RNA-binding domain, RBD 22 105 IPR035979 GO:0003676
Cca04g00676 106 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 16 105 - -
Cca04g00676 106 Gene3D - 16 106 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00676 Cca-Chr4 6627729 6628418 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00676 5 105 Eukaryotic Initiation Factors Gene Family AT4G34110 35.644 2.06e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00676 K13195 - gmx:100306540 163.31