Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00668 ATGCGTTTAACCAGCGCTTTTCTTCTCGCCTTACCTCCACTTCTAAGTGTAACTGTGCGTGTGCGTGTGCGTCATTACTCATCAACCAAGTTGTTTGTCGCAGGGCTTTCCTACGATACCAATCAACCGGTTCTCAGAGACTCCTTTGGGCAACACGGTGAAATCATTGAAGTTAAAGTAATATGTGATCACATGACTGAGAAATCAAGAGGGTATGGATTTGTGCGGTTCGTTTCTGAAACTACAGCTGCTACAGCTTGCAAAGAAATGCACGCCCAGATATTAGATGGAAGACGCATTCAGGTGAGTTATGCGCACAAAGGGTAG 327 0.4526 MRLTSAFLLALPPLLSVTVRVRVRHYSSTKLFVAGLSYDTNQPVLRDSFGQHGEIIEVKVICDHMTEKSRGYGFVRFVSETTAATACKEMHAQILDGRRIQVSYAHKG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00668 108 Gene3D - 18 108 IPR012677 -
Cca04g00668 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
Cca04g00668 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cca04g00668 108 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 19 107 - -
Cca04g00668 108 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 19 107 - -
Cca04g00668 108 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cca04g00668 108 SUPERFAMILY RNA-binding domain, RBD 24 107 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00668 Cca-Chr4 6563777 6564473 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00668 25 107 Eukaryotic Initiation Factors Gene Family AT4G34110 36.145 1.79e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00668 K13195 - gmx:100306540 154.836