Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00668 | ATGCGTTTAACCAGCGCTTTTCTTCTCGCCTTACCTCCACTTCTAAGTGTAACTGTGCGTGTGCGTGTGCGTCATTACTCATCAACCAAGTTGTTTGTCGCAGGGCTTTCCTACGATACCAATCAACCGGTTCTCAGAGACTCCTTTGGGCAACACGGTGAAATCATTGAAGTTAAAGTAATATGTGATCACATGACTGAGAAATCAAGAGGGTATGGATTTGTGCGGTTCGTTTCTGAAACTACAGCTGCTACAGCTTGCAAAGAAATGCACGCCCAGATATTAGATGGAAGACGCATTCAGGTGAGTTATGCGCACAAAGGGTAG | 327 | 0.4526 | MRLTSAFLLALPPLLSVTVRVRVRHYSSTKLFVAGLSYDTNQPVLRDSFGQHGEIIEVKVICDHMTEKSRGYGFVRFVSETTAATACKEMHAQILDGRRIQVSYAHKG | 108 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00668 | 108 | Gene3D | - | 18 | 108 | IPR012677 | - | |
Cca04g00668 | 108 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 100 | IPR000504 | GO:0003723 | |
Cca04g00668 | 108 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Cca04g00668 | 108 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 19 | 107 | - | - | |
Cca04g00668 | 108 | PANTHER | GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED | 19 | 107 | - | - | |
Cca04g00668 | 108 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 | |
Cca04g00668 | 108 | SUPERFAMILY | RNA-binding domain, RBD | 24 | 107 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00668 | Cca-Chr4 | 6563777 | 6564473 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00668 | 25 | 107 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.145 | 1.79e-13 | 63.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00668 | K13195 | - | gmx:100306540 | 154.836 |