Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00667 ATGTCTGCAGCTCTCGATATGACCCTCGACGACATAATCAAGAACAACAAAAAATCTGGATCCGGAAACTCGCGTGGCCGCGGCGCCCGAACCTCCAGATCGGGACCTGGACCTTCTCGCCGCTTCTCTAACCGAGCCGCCAACCGCGCCGCTCCTTATTCCACCGCTAAGGCGCCGGAGGCCACGTGGCAGCACGATATGTATGCAGATCAGCACGTGGCTGTGGGGGGATACCCTGCTCAAGGAGGCCGTGCGCCTTCCATTGAGACTGGGACCAAACTTTACATTTCGAACTTGGATTTTGGAGTTTCCAACGATGATATCAAGGAATTGTTTTCTGAAGTTGGTGACATGAAACGGCACGGGGTTCATTATGACAGAAGTGGCAGATCGAAGGGTACGGCTGAAGTAGTATTTTCACGACGATCTGATGCCGTGGCTGCTGTAAAAAGGTACAACAATGTTCAGCTAGATGGGAAACCAATGAAGATAGAGATTGTGGGAACCAACATTGCTACACCTGGTGTGGCTCCTGCCACAAATGGAGCTATTGGAAACTTTAATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGTGCATTAAGAAGGCCAGGAGGAAGAGGACAAGGCATTCGAAGGGATCGAGGACGTGGAAGAGGTCGTGGTGGAGGAGGTCGTGGCGAAAAGGTATCCGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATTCAGAGGCAATGCAAACTGAATGA 753 0.5113 MSAALDMTLDDIIKNNKKSGSGNSRGRGARTSRSGPGPSRRFSNRAANRAAPYSTAKAPEATWQHDMYADQHVAVGGYPAQGGRAPSIETGTKLYISNLDFGVSNDDIKELFSEVGDMKRHGVHYDRSGRSKGTAEVVFSRRSDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPGVAPATNGAIGNFNGVPRSGQGRGGALRRPGGRGQGIRRDRGRGRGRGGGGRGEKVSAEDLDADLEKYHSEAMQTE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00667 250 MobiDBLite consensus disorder prediction 14 41 - -
Cca04g00667 250 SMART FoP_duplication_2 177 250 IPR025715 -
Cca04g00667 250 Pfam C-terminal duplication domain of Friend of PRMT1 193 246 IPR025715 -
Cca04g00667 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 162 IPR000504 GO:0003723
Cca04g00667 250 MobiDBLite consensus disorder prediction 187 250 - -
Cca04g00667 250 SMART rrm1_1 93 165 IPR000504 GO:0003723
Cca04g00667 250 SUPERFAMILY RNA-binding domain, RBD 85 198 IPR035979 GO:0003676
Cca04g00667 250 MobiDBLite consensus disorder prediction 207 250 - -
Cca04g00667 250 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 249 - -
Cca04g00667 250 MobiDBLite consensus disorder prediction 1 58 - -
Cca04g00667 250 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 249 - -
Cca04g00667 250 CDD RRM_THOC4 92 166 - -
Cca04g00667 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Cca04g00667 250 Gene3D - 80 232 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00667 Cca-Chr4 6554581 6558874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00667 91 166 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 3.13e-09 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00667 04 6554581 6558874 Cca04g00667 04 6554581 6558874 ECH