Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00662 ATGTTACTACTTATCGGAGATGTTAATGTTACAGATGTGGATGCTTGTTCTCACTGTGTTGAGCAAGAGAATAGCAATAGGACTAAGAAGGGTAGGAATTCGAGGAGCAAGTTCAAAGGTGCTGCGAAGAAATGGGAGGAGAATCAACGGAGGTGGAAGTGTGAATGGGATAGGGAAAGGTTAGAGCTTGATCGGAGGTTGAAGGAGCAATTGAGTTTGAGTCGATCTGGGTCTGGTGGAACGAGTTCTATTAATCATGGGGATGTGTTGGAGGCTCTGTCTCGGGCTCTGAGGAAGACTGAGGAGTCTTATCTCGATGTTGCTGATAAGATGGTGATGGAGAATCCGGAACTTGCTTTGATGGGTTCGTGTGTTCTTGTGATGTTGATGAAGGGGGAGGATGTTTATGTGATGAATGTGGGGGATAGTCGCGCCGTGTTGGCTCAGAAGGCTGAGCCTGATTACTGGCTTGGGAAAATCAGACAGGACTTGGAGAGGATCAATGAGGAGACAATGAATGATCTTGAATCTTGGGATGTCGACACCTCCAACTTGGTTCCGAGTTTGAGTGCGATTCAGCTCACTAAGGATCATAGTACCAGTGTTGAGGAAGAAGTCCAGAGAATCAAAAAGGAGCATCCGGATGATCCTTGTGCTGTAGTAAATGACCGTGTAAAGGGTTCTCTCAAGGTTACTCGAGCATTTGGTGCTGGATTTCTCAAACAGCCCAAGTGGAACAACGCGCTTCTGGAGATGTTTAGAATAGACTACCATTGCAATCCCAGTTCAACCAATCGTGTTGCCACAGTGGAATGCCACTCTCCAGCTGAAGAATCCAAAATTGAGGACAATTTTCCACTTGAAACTGCTCTGCGTACTTCACCAGCTAATCCAAATGGAGTCCTACCAGTGAGGAGTTGCAATATGATGATTCCAAAAGAGTATATGTCAGATTTAGGTGTTAGTACACCAGTTCTGTGA 981 0.4557 MLLLIGDVNVTDVDACSHCVEQENSNRTKKGRNSRSKFKGAAKKWEENQRRWKCEWDRERLELDRRLKEQLSLSRSGSGGTSSINHGDVLEALSRALRKTEESYLDVADKMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEETMNDLESWDVDTSNLVPSLSAIQLTKDHSTSVEEEVQRIKKEHPDDPCAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYHCNPSSTNRVATVECHSPAEESKIEDNFPLETALRTSPANPNGVLPVRSCNMMIPKEYMSDLGVSTPVL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00662 326 PANTHER PROTEIN PHOSPHATASE 2C 46 256 IPR015655 GO:0004722|GO:0006470
Cca04g00662 326 Gene3D - 11 281 IPR036457 -
Cca04g00662 326 SMART PP2C_4 22 293 IPR001932 -
Cca04g00662 326 SUPERFAMILY PP2C-like 83 246 IPR036457 -
Cca04g00662 326 ProSiteProfiles PPM-type phosphatase domain profile. 64 326 IPR001932 -
Cca04g00662 326 CDD PP2Cc 85 243 IPR001932 -
Cca04g00662 326 PANTHER PROTEIN PHOSPHATASE 2C 23-RELATED 46 256 - -
Cca04g00662 326 MobiDBLite consensus disorder prediction 22 42 - -
Cca04g00662 326 Pfam Protein phosphatase 2C 81 242 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00662 Cca-Chr4 6504864 6506598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00662 43 257 PP2C-type Phosphatase Gene Family AT1G07630 76.852 4.09e-108 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00662 - - ccaj:109798553 624.009