Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00658 ATGTCCCTTGAAGAGTCGCTAAGATCTCTGCCGCTGGATTACCTGAACCTCCTCATCAACGGCCAGGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGACGTCTGGTTCACGCGCACCGCTGCATACTGGCCGCGCGGAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACCCACCCTCTGGCCTGGACCCCACCGGCCCAAGGATCAACTCGCGCTCCGGAGTCATACCCGTCAACTCCGTCGGCTCCGAGGTCTTCCTCCTCATGCTCCAGTTTCTCTACAGTGGCCTGGGGTGCGGGAGAACGGGGGGTGTGGGGTGCGGGAAGGAGGTGGGGAAGGTTACAAAGACTAAAGGAAACAAAAATGGCAAATGTACCTACACAGGGGTACATGAGTAA 402 0.5846 MSLEESLRSLPLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGPRINSRSGVIPVNSVGSEVFLLMLQFLYSGLGCGRTGGVGCGKEVGKVTKTKGNKNGKCTYTGVHE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00658 133 SUPERFAMILY POZ domain 10 97 IPR011333 -
Cca04g00658 133 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 97 IPR044284 GO:0099402
Cca04g00658 133 SMART BTB_4 25 127 IPR000210 GO:0005515
Cca04g00658 133 Gene3D Potassium Channel Kv1.1; Chain A 7 99 IPR011333 -
Cca04g00658 133 ProSiteProfiles BTB domain profile. 25 97 IPR000210 GO:0005515
Cca04g00658 133 Pfam BTB/POZ domain 16 97 IPR000210 GO:0005515
Cca04g00658 133 PANTHER REGULATORY PROTEIN NPR5 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00658 Cca-Chr4 6482787 6483578 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca04g00658 BTB 8.6e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00658 K14508 - ccaj:109798552 218.009