Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00656 ATGGCCAAGACACTGATTTCGTCTCCATCGTTCATCGGCACGCCGCTTCCCTCGCTCCCTCGCCACCGCTTCCCCCACCGCACAAGGCTAGTCGCTACAAAAGTCCACGTCAGCCTCCACCAATTTCCCCCGATTCAATCCATAAGCCACTCCATTGACTTCGCCGGAATCGTCACCAGAGCCGAAGGCCTTCTTTACACGCTCGCCGACGCCGCTGTTGCCGCGGACCCCGCGGCTTCCACCACCACTGCCACCACCGATGCTGCCGTGCAGAAGAACGGAGGCTGGTTCGGCTTCATCTCCGAAGGCATGGAGTTCGTTCTCAAGGTTTTGAAGGATACACTTTCTGCCGTGCATGTGCCTTATTCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAGGCAGCAACGCTTCCCTTGACAAAGCAGCAGGTTGAATCAACACTGGCTATGCAAAACCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAGGAAAGAATACAACTTGAGACGTCCAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAGGTTGTTTTCCAACGTTGGCTACCATTCCAGTCTGGATTGGTCTCTACCAAGCTTTATCAAATGTGGCAAATGAGGGACTGTTAACAGAAGGTTTCTTTTGGATACCATCTTTGGGTGGTCCTACTACCATTGCTGCTAGACAAAGTGGAAGTGGCATTTCTTGGCTTTTTCCATTTGTGGATGGGCATCCACCTTTGGGTTGGCAAGAAACTGTAGCATATCTTGTTTTACCTATTCTTCTTATTGTTTCTCAATACGTTTCAATGGAAATAATGAAACCACCTCAGACAGATCCTTCTCAAAAGAATTCACTTCTTGTTTTAAAGTTTCTCCCACTCATGATTGGCTACTTCTCACTATCTGTTCCTTCAGGACTAACAATTTACTGGTTTACAAACAATGTCCTTAGTACAGCTCAACAAGTATGGTTGCGCAAATATGGAGGTGCAAAGCCTGTTGTGGATCAAAATGCTGGTGGAATTATTACTGCAGGGCGTGCTAAAAGAACAGGGTCGGAGCCAGCAAGAGGTGGTGAAAGGTTTAAGCAGTTAAAGGAAGAGGAAAAGAAGAAAAAGTTAAGCAAGGCACTACCAGTGGAAGAAGTTCAGCCACTGGCTTCTGCTTCTGATGATGGCTCGGATGTAGAAAGTGACGACAAGGTATGTATTCAACTTCTGGATTCTCTTGGTTACGAAATTTTTGTGATAGAGCTGTCTTTTTGA 1296 0.4645 MAKTLISSPSFIGTPLPSLPRHRFPHRTRLVATKVHVSLHQFPPIQSISHSIDFAGIVTRAEGLLYTLADAAVAADPAASTTTATTDAAVQKNGGWFGFISEGMEFVLKVLKDTLSAVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWQETVAYLVLPILLIVSQYVSMEIMKPPQTDPSQKNSLLVLKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKYGGAKPVVDQNAGGIITAGRAKRTGSEPARGGERFKQLKEEEKKKKLSKALPVEEVQPLASASDDGSDVESDDKVCIQLLDSLGYEIFVIELSF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00656 431 Pfam 60Kd inner membrane protein 124 337 IPR001708 GO:0016021|GO:0032977
Cca04g00656 431 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 123 336 IPR028055 -
Cca04g00656 431 PANTHER INNER MEMBRANE PROTEIN ALBINO3, CHLOROPLASTIC 1 407 - -
Cca04g00656 431 PANTHER OXA1 1 407 IPR001708 GO:0016021|GO:0032977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00656 Cca-Chr4 6472685 6478567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00656 19 393 Chloroplast and Mitochondria Gene Families AT2G28800 67.287 5.33e-178 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00656 K03217 - gmx:100817173 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00656 04 6472685 6478567 Cca04g00656 04 6472685 6478567 ECH